<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03354

Description Uncharacterized protein
SequenceMEVDGGGAVGDVEGGGGAGGGGGGGGGGHQPSPATVFRIRLKQPPSSLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPINLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPSNSSNSSNLKTFEEKFLTQQPQSSAGWPNILCVCSVFSSGSVQLHWSQWPSQNSGQPRWFSTSKGLLGAGPSGIMAADAIITETGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPPLWAGFAPLASYLFSLQDYLVSEGAHTKKQVQDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANYGGQPPMQTVWSTRVNKSIPPSEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPNLLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSTPSPSNNQGNQGGVASATGSSQMQEWVQGAIAKISNNADGAANAAPNPVSGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIHANAQKNSDPSMQKQHLMNGKTEDNTSAVRSGLGAAKVEDGPTSRGQLVFGAKGLEENPVGNKSTRIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPASQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNMPQLKINGSTSRHLSDMEEDTDSSFGIQSLWPRKRRLSERDAAFGLKTSVGLGTFLGVMGSRRDVITAVWRTGLEGEWYKCIRCLRQTCAFAQPGAPNTTNEIEAFWISRWTHACPMCGGSWVKALPGFIVYLQQS
Length1229
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.07
Grand average of hydropathy-0.202
Instability index50.36
Isoelectric point6.74
Molecular weight132732.59
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03354
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     225.21|      71|     111|     813|     890|       1
---------------------------------------------------------------------------
  813-  890 (106.62/74.88)	QGNQGGVASATGSSQMQEwvqGAIAKiSNNADGAANAAPNPVSGRSSFMPiSINTGTFPGTPAVRLIgdCHFLHRLCQ
  929-  999 (118.60/62.33)	EDNTSAVRSGLGAAKVED...GPTSR.GQLVFGAKGLEENPVGNKSTRIG.SGNAGQGYTSDEVKVL..FLILVDLCK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.28|      22|      30|     517|     546|       3
---------------------------------------------------------------------------
  517-  543 (31.13/34.19)	PNdvrqLAQiVYSAH...GGEVA.VAFLRGG
  550-  575 (33.14/13.60)	PN....FDQ.VDSYHvnvGSAIApPAFSSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     187.36|      48|     337|     429|     479|       6
---------------------------------------------------------------------------
   22-   46 (30.43/10.46)	......................GGGGGGGHQPSPATVFRIRLKQ..PPS..
  429-  479 (80.60/53.95)	ITgwRVQCWESSVQPVVLHPIfGSPANYGGQPPMQTVWSTRVNKSIPPSED
  768-  812 (76.33/40.18)	IT..RLRRYASFCRTLASHAV.GASSGSGNSRNMVT...SPTNSTPSPSNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     275.30|      82|     529|     134|     222|       7
---------------------------------------------------------------------------
  134-  222 (142.28/97.86)	ALLVANFHGRITIWTQPTKGPiNLVR............DASSWQCEHEWRQDLSVVTKWLSG..ISPYRWLPSNSSNSSNLktfeekFLTQQPQSSAGWPNIL
  655-  750 (133.02/77.27)	ALLDADFHCLPTIQQRQQHCP.NLDRikcrllegtnaqDVRALVLDMQARLLLDMLGKGIESalINPSTLLPEPWQASSDM......LSSIGPDKMTVDPNLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.16|      41|     231|      50|      93|       8
---------------------------------------------------------------------------
   50-   93 (72.65/51.47)	HKMRVPeLCRNFSAVAW.....CGK.LNAIACASETCARIPSSNssPPFW
  279-  325 (65.52/36.96)	HVAGVP.LVNPSTVVVWevmpgLGNgIQATAKINATSSLPPSLN..PPLW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03354 with Med16 domain of Kingdom Viridiplantae
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