<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03353

Description Uncharacterized protein
SequenceMATAAPDAAAPAAEEPLQSEASADPAAESEGASDSGAVAAATPAAVDGAADGDASTAPAPASSFSATPPPMPANPVPPATPGPPRPPFGAPPAYGSPQAPAFSYNVLPRAPPRPQAMTAPSLPAAALQPPVPVQYFGNRPSFSYNVVSQSNTGLPTGQQFQLDTGTNHAAQRFVPPTSLQPPAPMSLARPSSAFPGAGAMPPNPPGSIRLPFPVPPRPSSNTFVASPQQAQPQTSQLPLNTGSSDVSTSQSHTRSVPEASQTMQLSTGPPSTSTTGSPSIAVQMPTNSSFPTRPEVFGGVGASVPVQPSTILSTPPSLFGRPMAPSASAFPQTSQSVAAPSAFPQTGQQQFHPSYPSAHGTVPSQPLWGYPPQPTGFQQPPFQSYPPGPLGPGRPMFGSSAVPNIQPPVHGSQNSGQPEDKKTTSIQDSDAWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEAEKIAAQPIPVAWDKLAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPAEVSELIKNAESGPLKGSSALLQDAGTVGNKGEISIDINTPAVQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPKGQQVPISGEKSKDNSGDGNMSDSSSDSDDEEHGPSKEDCIRQFKEMLKERGVAPFSKWEKELPKLVFDPRFKAIPSHSRRTIFDHYVRTRADEERKEKKAAQRAAVEAYKQLLEEVSEDINSNKDYQEFKRKWGTDPRFEALDRKEREALFNEKVKSIEEKVQSLRNAVITEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREDAFNEYVAELKSAEKEAEQAAKAKLDEQAKLKERERETRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPKLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVVTPEVAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMARKLKQSDTKEKSDTDGKQRRSSDPPRRR
Length1036
PositionUnknown
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-0.806
Instability index58.36
Isoelectric point8.57
Molecular weight112146.49
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03353
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     481.22|      49|      49|     284|     332|       1
---------------------------------------------------------------------------
   60-   98 (59.05/16.91)	.PA.SSFSATPP...PMPAN............P.VP...PAT...............PG.P.PrPPFG...APPAYGS...PQ
  107-  146 (51.10/13.67)	LPRA...PPRPQAM.....T...........AP.SL...PAAA.L............QP.PvPvQYFGN..RPSFS.Y...NV
  148-  195 (51.86/13.98)	SQSNTGLPTGQQFQLDTGTN...........HA.AQrfvPPTS.L............QP.PaP.MSLARP....SSAF...P.
  196-  228 (35.36/ 7.25)	...............GAGAM...........PP.NP...PGSI..............RL.P.....FPVPPRPSSNTFvasPQ
  231-  279 (36.02/ 7.52)	QPQTSQLPLNT......GSSdvstsqshtrsVP.EA...SQTMqL............STgP.P.S.......TSTTGS...PS
  284-  332 (91.18/30.00)	MPTNSSFPTRPEVFGGVGAS...........VP.VQ...PSTI.L............ST.P.P.SLFGRPMAPSASAF...PQ
  337-  379 (67.42/20.32)	VAAPSAFPQTGQ..QQFHPS...........YP.SA...HGTV.P............SQ.P....LWGYP..PQPTGF...QQ
  385-  428 (55.41/15.43)	YPPGPLGPGRP.MFGS..SA...........VPnIQ...P.PV.H............GS.Q.N.S..GQPEDKKTTSI...QD
  559-  604 (33.81/ 6.62)	.....SLPLRQTV..................AP.AS...PSA..LdlikkklqdagaSS.V.P.SPLATP..SSASEL...NG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     364.50|      57|      65|     641|     697|       2
---------------------------------------------------------------------------
  641-  697 (90.99/47.84)	DDEEHGPSKEDCIRQFKEM....LKE.RGVA...............PFSKWEKELP....KLVFDPRFKAI.PSHSR...RTIFD
  707-  765 (68.85/34.54)	ERKEKKAAQRAAVEAYKQL....LEE...VS...............EDINSNKDYQefkrKWGTDPRFEAL.DRKER...EALFN
  771-  828 (78.31/40.22)	IEEKVQSLRNAVITEFKSM....LREsKDIT...............STSRWTKVKE....NFRSDARYKAM.KHEER...EDAFN
  857-  934 (54.64/26.00)	ERERETRKRKE..REEQEMervkLKI.RRKEavssyqallveiikdPKASWTESKP....KLEKDPQGRAVnPDLGKgdaEKLFR
  945- 1000 (71.70/36.25)	VRDFRALLSEVVTPEVAAR....TTD.EGKT...............AINSWTEAKG....LLRSDPRYNKL.ASKDR...ESIW.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.28|      26|      49|     432|     457|       3
---------------------------------------------------------------------------
  432-  457 (48.80/36.53)	WSAHKTEAGVVYYYNALTGESTYQKP
  484-  509 (48.47/36.22)	WSIVTTSDGKKYYYDNKQKVSSWQLP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03353 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKLDEQAKLKERERETRKRKEREEQEMERVK
2) AGASSVPSPLATPSSASELNGSKTTDAAPKGQQVPISGEKSKDNSGDGNMSDSSSDSDDEEHGPSKEDCIRQF
3) MATAAPDAAAPAAEEPLQSEASADPAAESEGASDSGAVAAATPAAVDGAADGDASTAPAPASSFSATPPPMPANPVPPATPGPPRPPFGAPPAYGSPQAPAFSYNVLPRAPPRPQAMTAPSLPAAALQPPVP
4) NKGEISIDINTPAVQTGGRDSLPLRQTVAPA
5) YADDMARKLKQSDTKEKSDTDGKQRRSSDPPRRR
6) YNVVSQSNTGLPTGQQFQLDTGTNHAAQRFVPPTSLQPPAPMSLARPSSAFPGAGAMPPNPPGSIRLPFPVPPRPSSNTFVASPQQAQPQTSQLPLNTGSSDVSTSQSHTRSVPEASQTMQLSTGPPSTSTTGSPSIAVQMPTNSSFPTRPEVFGGVGASVPVQPSTILSTPPSLFGRPMAPSASAFPQTSQSVAAPSAFPQTGQQQFHPSYPSAHGTVPSQPLWGYPPQPTGFQQPPFQSYPPGPLGPGRPMFGSSAVPNIQPPVHGSQNSGQPEDKKTTSIQDSDAW
841
584
1
539
1003
144
877
656
132
569
1036
432










Molecular Recognition Features






MoRF SequenceStartStop




1) ALDLIKKKLQD
2) AVAAATPAAV
3) DGKKYYYD
4) MATAAPDAAAPAAEEPLQSE
5) SIWRRYADDMARKLKQ
573
37
491
1
998
583
46
498
20
1013