<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03352

Description Uncharacterized protein
SequenceMATAAPDAAAPAAEEPLQSEASADPAAESEGASDSGAVAAATPAAVDGAADGDASTAPAPASSFSATPPPMPANPVPPATPGPPRPPFGAPPAYGSPQAPAFSYNVLPRAPPRPQAMTAPSLPAAALQPPVPVQYFGNRPSFSYNVVSQSNTGLPTGQQFQLDTGTNHAAQRFVPPTSLQPPAPMSLARPSSAFPGAGAMPPNPPGSIRLPFPVPPRPSSNTFVASPQQAQPQTSQLPLNTGSSDVSTSQSHTRSVPEASQTMQLSTGPPSTSTTGSPSIAVQMPTNSSFPTRPEVFGGVGASVPVQPSTILSTPPSLFGRPMAPSASAFPQTSQSVAAPSAFPQTGQQQFHPSYPSAHGTVPSQPLWGYPPQPTGFQQPPFQSYPPGPLGPGRPMFGSSAVPNIQPPGVSTDRDSKELSTTNSGSEQPTHASAELSSTVHGSQNSGQPEDKKTTSIQDSDAWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEAEKIAAQPIPVAWDKLAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPAEVSELIKNAESGPLKGSSALLQDAGTVGNKGEISIDINTPAVQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPKGQQVPISGEKSKDNSGDGNMSDSSSDSDDEEHGPSKEDCIRQFKEMLKERGVAPFSKWEKELPKLVFDPRFKAIPSHSRRTIFDHYVRTRADEERKEKKAAQRAAVEAYKQLLEEVSEDINSNKDYQEFKRKWGTDPRFEALDRKEREALFNEKVKSIEEKVQSLRNAVITEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREDAFNEYVAELKSAEKEAEQAAKAKLDEQAKLKERERETRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPKLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVVTPEVAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMARKLKQSDTKEKSDTDGKQRRSSDPPRRR
Length1067
PositionUnknown
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-0.814
Instability index57.47
Isoelectric point8.02
Molecular weight115308.70
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03352
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     444.31|      48|      49|      83|     130|       1
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    6-   43 (35.47/ 6.62)	....P...DAAAP..AAEEPlQSEA......................SA.........D...PAAESE...GASDSGAVAAATP
   45-   81 (52.15/12.81)	AVD......GAADgdASTAP..APAS.SFSA..............TP...........P...PMP.......ANPVPPAT...P
   83-  130 (97.18/29.53)	PPRPP...FGAPP..AYGSP.QAPAF.SYNV..............LPRA.........P...PRPQAM...TAPSLPAAALQPP
  132-  176 (50.84/12.33)	PVQ.Y...FGNRP...........SF.SYNV..............VSQS.........NtglPTGQQFqldTGTNHAAQRFVPP
  181-  211 (52.87/13.08)	PPAPM...SLARP..SSAFP.GAGA.......................M.........P...PN............PPGSIRLP
  215-  285 (47.76/11.18)	PPRPSsntFVASP..QQAQP.QTSQL.PLNTgssdvstsqshtrsVPEAsqtmqlstgP...PSTSTT...GSPSI...AVQMP
  291-  322 (37.24/ 7.28)	PTRPE..vFGGVG..A.SVP.VQPS....TI..............LS........................TPPSLFG...RP.
  362-  408 (70.80/19.73)	VPSQP..lWGYPP..QPTGF.QQPPFqSYPP..............GPLG.........P...GRP.MF...GSSAVP..NIQPP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     393.56|      61|      61|     737|     797|       2
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  674-  739 (75.37/38.49)	EEHGPSKEDCIRQFKEMLKErgV.............APFSKWEKELP....KLVFDPRFKA....IPSHSRRTIFDH....yvrtradEER
  740-  805 (91.03/47.94)	KEKKAAQRAAVEAYKQLLEE..V.............SEDINSNKDYQEFKRKWGTDPRFEA....LDRKEREALFNE......kvksiEEK
  806-  870 (74.52/37.98)	..VQSLRNAVITEFKSMLRE................SKDITSTSRWTKVKENFRSDARYKA....MKHEEREDAFNE....yvaelksAEK
  871-  906 (40.07/17.20)	EAEQAA........KAKLDE..Q.............AK.......LKERER........ET....RKRKER.....E........eqeMER
  907-  975 (63.40/31.27)	VKLKIRRKEAVSSYQALLVE..I.............IKD..PKASWTESKPKLEKDPQGRAvnpdLGKGDAEKLFRD....hvkdlyeRC.
  976- 1047 (49.16/22.68)	..........VRDFRALLSE..VvtpevaarttdegKTAINS...WTEAKGLLRSDPRYNK....LASKDRESIWRRyaddmarklkqSDT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.28|      26|      49|     463|     488|       3
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  463-  488 (48.80/30.69)	WSAHKTEAGVVYYYNALTGESTYQKP
  515-  540 (48.47/30.43)	WSIVTTSDGKKYYYDNKQKVSSWQLP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.73|      13|      15|     416|     428|       4
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  416-  428 (22.64/14.25)	SKELSTTNSGSEQ
  433-  445 (23.09/14.69)	SAELSSTVHGSQN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     117.20|      39|      49|     562|     601|       5
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  562-  587 (36.02/17.12)	........................LQDAGTVGNKGEISIDINTP..AVQTGG
  588-  635 (43.72/27.18)	RDSLPLRQTVaPASpsaldlikkkLQDAGA....SSVPSPLATPssASELNG
  639-  670 (37.45/18.44)	TDAAPKGQQV.PIS.......gekSKDNSGDGNMSDSSSD............
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03352 with Med35 domain of Kingdom Viridiplantae
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