<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03349

Description Uncharacterized protein
SequenceMAVTSARFPLPSSSPLLPLFPESLPGDERMFEPEGSTGTRSLREIVEEEEDDDGGGKTHVAVGKDFKDGKVNIQWAARKLQLQQSDLKKLVLLHVHQPADRIMSGLCKVPAKQLEEKELRAYRKIEKNDMNKLLDQYLSCCRAFAKVQAEILVIEKNNVANGIAELIDQNHITRLVMGTSSFSVKRQLPKSKVAASVHQQAKPYCQILYICKETLACTREANQFAEKGHPPRSRSGGSLPDQPQFPPRSVSYSSCYPGLLDPLDKQSLRQRSNSVSYPSSRHLENGMENISPTRWHSVHVTPKGCSPNSSPTLNDFDTMDVPSAAVSIASCEEHQHSTFRAREDSLCKEKIEKEERLTREKARLEKEHLQIYNELQKANEQRVELERKLMHANSSMEGLQNVQGELQHVKDNAVKEDNNMHEVHCDNVFGSTGSVALTEFSYTEIKEATNDFNESKKIGHGGCGSVYKGFLRHTIVAIKKFNREGITGEKEYDDEVETLGRMRHPNLVTLIGVCREAKVLVYEFLPNGSLEDRLQCKHQTDPLPWRTRIKIAADICTALIFLHSNKPKGIAHGDLKPDNVLLGDNFVGKLGDFGISRPLNLTNTTITPYHRTSQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTSKSPLGLPSVVEAALNNDMLQEIIDVSAGEWPPEYTKKLAILALRCCRFNRKERPDLAKEAWGVLQDMVNHPDNKCETPSFFICPMTQEIMRDPHIAADGFTYEGGAIKDWFQRGHKMSPMTFLSFTHHELIPNNALRFAIQEWKMKQQL
Length800
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.07
Grand average of hydropathy-0.527
Instability index46.10
Isoelectric point6.85
Molecular weight90043.52
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03349
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.21|      29|     164|     340|     370|       1
---------------------------------------------------------------------------
  340-  370 (40.57/31.60)	RAREDSLCKEKIEKEERLTREKARLekEHLQ
  372-  400 (46.64/30.07)	YNELQKANEQRVELERKLMHANSSM..EGLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.76|      43|      73|     213|     255|       3
---------------------------------------------------------------------------
  213-  255 (80.12/45.84)	ETLACTR.EANQFAEKGHPPRSRSGGSLPDQPQFPPRSVSYSSC
  288-  331 (73.64/41.57)	ENISPTRwHSVHVTPKGCSPNSSPTLNDFDTMDVPSAAVSIASC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.11|      27|     553|     138|     171|       4
---------------------------------------------------------------------------
  138-  171 (34.54/44.80)	LSCCRaFAKVQAEILVIEknnvANGIaeLIDQ.NH
  694-  721 (49.57/35.10)	LRCCR.FNRKERPDLAKE....AWGV..LQDMvNH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.98|      16|      29|     469|     484|       6
---------------------------------------------------------------------------
  469-  484 (27.93/22.07)	GFLRH.TIVAIKKFNRE
  500-  516 (25.04/18.98)	GRMRHpNLVTLIGVCRE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03349 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PESLPGDERMFEPEGSTGTRSLREIVEEEEDDDGGGKTHVA
2) RVELERKLMHANSSMEGLQNVQGELQHVKDNAVKED
3) SLRQRSNSVSYPSSRHLENGMENISPTRWHSVHVTPKGCSPNSSPTLNDFDTMDVPSAAVSIASCEEHQ
21
382
267
61
417
335










Molecular Recognition Features






MoRF SequenceStartStop




NANANA