<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03343

Description Uncharacterized protein
SequenceMWARQRSRARDEKAAPAADLRRRRLTCGGGREEGRRQQPPVTVSPHLVRGLHCQEGKKKMDPHHVQQQQYVDPYRTMVLSPQPDHLNALQYNQQQPTSQATPPPPQHHHASLASHFHLLHARLGNGAGWARTETIKGWGRGSEPGSFELRRQRLRFQRGVRLLMEERAPCDDGEMRWRFWIQRCAMEVLDPAMRDGGSGSGDSWWRCWVQRCAAETEARDGGAELMTRLADAIGKGTRNQHSDALVEDLTSQFARCQQLLNSISGTLSSKSITVEGQRKSLEETQQLLDQRKDLITKYRSSVEGLLKGDTTR
Length312
PositionMiddle
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.05
Grand average of hydropathy-0.916
Instability index48.12
Isoelectric point9.70
Molecular weight35439.49
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03343
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.24|      22|      25|     173|     197|       1
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  173-  197 (44.65/33.55)	GEMRWRFWIQRCAMEvldPAMRDGG
  201-  222 (49.59/29.67)	GDSWWRCWVQRCAAE...TEARDGG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.25|      24|     126|       2|      25|       2
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    2-   25 (42.36/21.30)	WARQRS.RARDEKAAPAA.DLRRRRL
  129-  154 (36.89/17.71)	WARTETiKGWGRGSEPGSfELRRQRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.68|      13|      20|      45|      64|       3
---------------------------------------------------------------------------
   45-   64 (21.61/21.44)	PHLVRGLHCQegkkkmdPHH
   73-   85 (26.07/11.65)	PYRTMVLSPQ.......PDH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.47|      25|      27|     236|     261|       4
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  236-  261 (39.12/37.39)	GTRNQHSdALVEDLTSQFARCQQLLN
  265-  289 (40.35/32.23)	GTLSSKS.ITVEGQRKSLEETQQLLD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03343 with Med9 domain of Kingdom Viridiplantae
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