<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03339

Description Uncharacterized protein
SequenceMAVAAATAERQLVVAVEGTAALGPYWSTTLTEYVEKIVRSFCAHELAGQKLAGVPPELALVVFHTHGPYSAFVVQRSGWTKDMNVFLSWLSGISFSGGGFNEAAISEGLSEALMILQGSPSNSQNHQNHEVQKHCILVAASNPYPLPTPVYRPLVQSTDHKENNDGAKESCLADAENVAKSFAQCSVSLSVISPKQLPTLKAIYNVGKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRPLHGNLVSNHPITKMDTTTTSVPVPTSNGNPSVNGPMLARQPNGVEPTTIPPMVSAPAFSHVTPVSNGASQGLSTVQSPPQSLISQETNLANDSVQEHKPLINNPIQQSVRPGGPANVSILNNISQHRSVANMISSGMPSVISSMSGTGQPIGNQQMVQNTAFGSNTSGIPGNSNVAVSSSLGNIQNNMGMSGPPVTQGGPMAGTQLGQGGINTNQNMMSSLGATAMSSGPAMMPTPGMVQQAGVNSLGVTNSSAMNMPIVQQHPNAQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASEALASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGQPQMVGTGMGQQQPQMVSTGMGQQQPQMVGAGMGQQFMQGHGRTVQQMMQGKMAPQGPGSMPGAGNMPGGGYLG
Length711
PositionUnknown
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.05
Grand average of hydropathy-0.269
Instability index43.20
Isoelectric point8.62
Molecular weight75059.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03339
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     372.53|      62|      62|     275|     336|       1
---------------------------------------------------------------------------
  246-  299 (77.37/25.85)	....HGNLVSN...HPITKMDTTT...TSVPV..PTSN.GNPS.V..N.....GPMLARQP..NGVE..PTTIPPMVSA
  300-  363 (83.56/28.53)	PAFSHVTPVSNGASQGLSTVQSPP...QSLIS..QETNLANDS.VqeH.....KPLI.NNPiqQSVR..PGG.PANVSI
  365-  423 (77.91/26.09)	NNISQHRSVANMISSGMPSVIS......SMSG..TGQPIGNQQmV..Q.....NTAFGSNT..SGI...PGNSNVAVSS
  437-  498 (70.26/22.78)	PPVTQGGPMA.GTQLGQGGINT.N...QNMMSslGATAMSSG......pammpTPGMVQQ...AGVN..SLGVTN.SSA
  657-  707 (63.43/19.83)	G.MGQQQPQMVGAGMGQQFMQGHGrtvQQMMQ..G..KMAP......Q.....GP..GSMP...GAGnmPGG.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.33|      27|     370|     214|     245|       2
---------------------------------------------------------------------------
  128-  154 (49.19/28.74)	NHEVQKHCILVAASNPYPLPTPVYRPL
  219-  245 (46.14/38.68)	DHAKNPHFLVLLSDNFLEARTALSRPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.20|      18|      19|     517|     534|       3
---------------------------------------------------------------------------
  517-  534 (35.62/23.10)	QQQPPPKYVKIWEGTLSG
  535-  552 (34.58/22.20)	QRQGQPVFICKLEGYRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.34|      15|      62|     570|     584|       4
---------------------------------------------------------------------------
  570-  584 (25.71/15.08)	RLIAQEHMNNKQYVG
  587-  601 (24.62/14.17)	DFLVFRTLNQHGFLG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03339 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GHGRTVQQMMQGKMAPQGPGSMPGAGNMPGGGYL
2) LHGNLVSNHPITKMDTTTTSVPVPTSNGNPSVNGPMLARQPNGVEPTTIPPMVSAPAFSHVTPVSNGASQGLSTVQSPPQSLISQETNLANDSVQEHKPLINNPIQQSVRPGGPANVSILNNISQ
3) RSVANMISSGMPSVISSMSGTGQPIGNQQMVQNTAFGSNTSGIPGNSNVAVSSSLGNIQNNMGMSGPPVTQGGPMAGTQLGQGGINTNQNMMSSLGATAMSSGPAMMPTPGMVQQAGVNSL
4) TNSSAMNMPIVQQHPNAQQQQQQQQQPPPKYVKIWEG
677
245
371
494
710
369
491
530










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKIW
523
528