<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03338

Description Uncharacterized protein
SequenceMAVAAATAERQLVVAVEGTAALGPYWSTTLTEYVEKIVRSFCAHELAGQKLAGVPPELALVVFHTHGPYSAFVVQRSGWTKDMNVFLSWLSGISFSGGGFNEAAISEGLSEALMILQGSPSNSQNHQNHEVQKHCILVAASNPYPLPTPVYRPLVQSTDHKENNDGAKESCLADAENVAKSFAQCSVSLSVISPKQLPTLKAIYNVGKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRPLHGNLVSNHPITKMDTTTTSVPVPTSNGNPSVNGPMLARQPNGVVGIPTANIKVEPTTIPPMVSAPAFSHVTPVSNGASQGLSTVQSPPQSLISQETNLANDSVQEHKPLINNPIQQSVRPGGPANVSILNNISQHRSVANMISSGMPSVISSMSGTGQPIGNQQMVQNTAFGSNTSGIPGNSNVAVSSSLGNIQNNMGMSGPPVTQGGPMAGTQLGQGGINTNQNMMSSLGATAMSSGPAMMPTPGMVQQAGVNSLGVTNSSAMNMPIVQQHPNAQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASEALASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGQPQMVGTGMGQQQPQMVSTGMGQQQPQMVGAGMGQQFMQGHGRTVQQMMQGKMAPQGPGSMPGAGNMPGGGYLG
Length721
PositionUnknown
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.04
Grand average of hydropathy-0.252
Instability index42.84
Isoelectric point8.77
Molecular weight76052.56
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03338
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.42|      23|      23|     640|     662|       1
---------------------------------------------------------------------------
  446-  471 (29.98/ 9.75)	GPpvtqGGP.MAGTQLGQGGIN....TN..QNM
  645-  668 (36.43/13.64)	FP....GQPQMVGTGMGQQQPQ....MVstGM.
  669-  695 (35.01/12.79)	GQ....QQPQMVGAGMGQQFMQghgrTV..QQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.69|      16|      23|     265|     280|       2
---------------------------------------------------------------------------
  265-  280 (30.89/13.17)	VPVPTSNGNPSVNGPM
  383-  398 (24.81/ 9.11)	VANMISSGMPSVISSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.12|      17|      23|     474|     495|       3
---------------------------------------------------------------------------
  474-  495 (28.46/19.04)	SLGAT...AMSsgpamMP....TPGMVQQ
  500-  523 (23.66/ 6.77)	SLGVTnssAMN.....MPivqqHPNAQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.80|      28|      88|     120|     154|       4
---------------------------------------------------------------------------
  121-  153 (40.11/43.60)	SNSQNHQNHEVQKHCILVaaSNPypLPTPVyRP
  338-  365 (50.69/23.50)	SQETNLANDSVQEHKPLI..NNP..IQQSV.RP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.86|      17|      17|     528|     544|       5
---------------------------------------------------------------------------
  528-  544 (33.45/24.25)	QQPPPKYVKIWEGTLSG
  546-  562 (32.41/23.23)	RQGQPVFICKLEGYRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.95|      15|      18|     402|     419|       9
---------------------------------------------------------------------------
  402-  417 (24.21/17.77)	GQPiGNQQMVQNTAFG
  422-  436 (25.74/ 8.27)	GIP.GNSNVAVSSSLG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03338 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EPTTIPPMVSAPAFSHVTPVSNGASQGLSTVQSPPQSLISQETNLANDSVQEHKPLINNPIQQSVRPGGPANVSILNNIS
2) GHGRTVQQMMQGKMAPQGPGSMPGAGNMPGGGYL
3) LHGNLVSNHPITKMDTTTTSVPVPTSNGNPSVNGPMLARQPNGVVGIPTANIK
4) NMISSGMPSVISSMSGTGQPIGNQQMVQNTAFGSNTSGIPGNSNVAVSSSLGNIQNNMGMSGPPVTQGGPMAGTQLGQGGINTNQNMMSSLGATAMSSGPAMMPTPGMVQQAGVNSL
5) TNSSAMNMPIVQQHPNAQQQQQQQQQPPPKYVKIWEG
299
687
245
385
504
378
720
297
501
540










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKIW
533
538