<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03336

Description Uncharacterized protein
SequenceMDGGGNWRPTQGSDPATVAAAAGGIDPNAPAPAGGDWRSQLQSEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTNQNPGNAQVIQNQNPTGPVPGLPQGSNPAQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNMSGVNQTATLQNMSGIPQNSMNNGLAQGTSQDIYATQRQIAGRQQQQQQSQNQLIYQQQQMLMKQKLQQNSLIQPHIQQQQSLLQSTQMQSSQQPMMQQISSGLQPGQSIPQTQSMVQSASQGGIQQNQLNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQQTQQPNIPLQPHLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMMNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQQRMHMLQTKAAVQQPQQQLHGQQSSLGLMPPQSQHNQLQQSQQQHLMSQFQAQPNQLQQQLGIPQQPSMQQRLQTSAGMLLQQSNIDQQKQFMQAPRGLQEVSSSTSVDSTAQTGHAGTGVGDWQEETYQMLKNLKDHYLAELNDLYNKISLKLQHVDNMATPQKQTDQYEKMKSFKGMLERIMSTLQMNKGSIQHGLREKIPVYERQIINILNSQKRPRSQGQTQFQQSAGQGPTSNIAQQPSQGLQQHDNHTNQIPQASMQSMSTGLQSSGAAGIQHLPASPATNFGVPTQQNVTNAPQAASNLEVTQGSNYNSLQHGSMSGALQQGSTGSMQGTLNAQQQASGSMLSHNSGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQHTSMVPQTQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRESLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGAGTSKKMKRDTSAMPLNVSSAGSVNDSFKQTYSMGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDAESFGATSEGAEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWESCVGA
Length1213
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.03
Grand average of hydropathy-0.696
Instability index72.55
Isoelectric point8.88
Molecular weight131861.80
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03336
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     211.98|      27|      27|     372|     398|       1
---------------------------------------------------------------------------
  261-  295 (29.55/ 6.22)	QQPMMQQissglqpgqsIP..QTQSM.VQSASQGGIQQ.
  337-  359 (35.10/ 9.37)	QQTQQPN..........IP..LQPHLMGQQQNL....QQ
  360-  391 (40.30/12.32)	NQLIGQQ.....ngavdMP..QQQRLPVQSNNLLNMQQT
  392-  420 (35.56/ 9.63)	QQMMNQQ.........sMPshQQQQLGSQA.NISTLQQQ
  421-  443 (34.79/ 9.20)	QQQ.NQQ...............QQQLLGTVPNVPNIQQR
  475-  500 (36.69/10.27)	QHNQLQQ..........S...QQQHLMSQFQAQPNQLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     370.52|      63|      65|      88|     151|       2
---------------------------------------------------------------------------
   62-  120 (52.67/16.14)	.....PV.SVPEGL..NE...LQKIAVRF........eekiytaaTS.......QSDYLRKiSLKMLS....ME.....................TKTNQN.PGNAQVIQN
  121-  178 (78.19/24.24)	QNPTGPVPGLPQGS..NP...AQSSAIPLMSQQQ.AR....qpnsTS.......VQS.....SL...............................TNLGQNmSGVNQTATL
  179-  225 (60.91/17.05)	QN....MSGIPQNSmnNG..lAQG.....................TS.......QDIYATQ...RQIA....GR.....................QQQQQQ.SQN.QLIYQ
  226-  309 (37.03/ 7.13)	QQQMLMKQKLQQNSliQPhiqQQQS...LLQSTQ.MQ........SSqqpmmqqISSGLQP.............gqsipqtqsmvqsasqggiqqNQLNSV.PQSVQSLL.
  503-  541 (46.43/11.03)	........GIPQ................QPSMQQrLQ........TS.......AGMLLQQ.S..NID....QQ.....................KQFMQA.PRGLQ....
  682-  712 (37.89/ 7.32)	QQPSQ...GLQQHD..N.....HTNQIPQASMQS.MS........TG.......LQS......................................................
  783-  832 (57.39/15.59)	QQASGSM..L.SH...N.....SGSAFPISSPQN.LQ........AS.......SP.........QIShhspQV.....................DQHNLL.PSQVKT...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     245.40|      93|     200|     833|     946|       3
---------------------------------------------------------------------------
  833-  946 (129.42/104.25)	GTPL........QSANspYMPSPSPPVAPSPIPVDSEKPLsNLSSSlTNTGQATHQHTSM.VPQTQSIAvnTPGISASPLLaeftsvdgnqanmPTQVLTKSSAAE.RPLdrLLKALRTTQRES
  978- 1042 (67.70/26.20)	GEDLvamtkcrlQARN..FITHDGAGTSKKMKRDTSAMPL.NVSSA.GSVNDSFKQTYSMgTPELQSTA.......................................................
 1106- 1149 (48.28/18.25)	..............................................................PSLKSM...FASAQMSPIL.............PLRVLVPASYPKcSPV..LLDKFPDEQRNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.75|      11|      28|       4|      14|       4
---------------------------------------------------------------------------
    4-   14 (23.64/15.05)	GGNWRPTQGSD
   34-   44 (22.11/13.50)	GGDWRSQLQSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.43|      13|      23|     586|     606|       7
---------------------------------------------------------------------------
  586-  598 (23.80/ 6.98)	DLYNKI.SLK..LQHV
  609-  624 (13.63/14.52)	DQYEKMkSFKgmLERI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.65|      11|      15|     751|     763|       9
---------------------------------------------------------------------------
  751-  763 (12.93/14.45)	QGSNyNSLQhGSM
  769-  779 (21.72/10.30)	QGST.GSMQ.GTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.93|      27|     417|     626|     652|      11
---------------------------------------------------------------------------
  626-  652 (46.76/30.47)	STLQMNKGSIQHGLREKIPVYERQIIN
 1044- 1070 (47.17/30.81)	SRVKWQKTEINHALMEEIHEINQQLID
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03336 with Med15 domain of Kingdom Viridiplantae
Unable to open file!