<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03335

Description Uncharacterized protein
SequenceMDGGGNWRPTQGSDPATVAAAAGGIDPNAPAPAGGDWRSQLQSEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTNQNPGNAQVIQNQNPTGPVPGLPQGSNPAQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNMSGVNQTATLQNMSGIPQNSMNNGLAQGTSQDIYATQRQIAGRQQQQQQSQNQLIYQQQQMLMKQKLQQNSLIQPHIQQQQSLLQSTQMQSSQQPMMQQISSGLQPGQSIPQTQSMVQSASQGGIQQNQLNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQQTQQPNIPLQPHLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMMNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQQRMHMLQTKAAVQQPQQQLHGQQSSLGLMPPQSQHNQLQQSQQQHLMSQFQAQPNQLQQQLGIPQQPSMQQRLQTSAGMLLQQSNIDQQKQFMQAPRGLQEVSSSTSVDSTAQTGHAGTGVGDWQEETYQMAIMATQLKNLKDHYLAELNDLYNKISLKLQHVDNMATPQKQTDQYEKMKSFKGMLERIMSTLQMNKGSIQHGLREKIPVYERQIINILNSQKRPRSQGQTQFQQSAGQGPTSNIAQQPSQGLQQHDNHTNQIPQASMQSMSTGLQSSGAAGIQHLPASPATNFGVPTQQNVTNAPQAASNLEVTQGSNYNSLQHGSMSGALQQGSTGSMQGTLNAQQQASGSMLSHNSGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQHTSMVPQTQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRESLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGAGTSKKMKRDTSAMPLNVSSAGSVNDSFKQTYSMGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDAESFGATSEGAEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWESCVGA
Length1219
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.03
Grand average of hydropathy-0.687
Instability index72.38
Isoelectric point8.88
Molecular weight132477.55
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03335
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     515.28|      56|      56|     388|     443|       1
---------------------------------------------------------------------------
  147-  185 (39.15/ 6.09)	QQQARQ.PNST........S........VQS.SLTNLGQ..NMSGV...................NQ.TATL....QNMSGI...P......
  186-  248 (45.93/ 8.71)	....QNSMNNG........L........AQGTSQDIYATQRQIAGRQQQ...QQ...QSQnqliyQQ.QQML.mkqKLQQNSliqPHI.QQQ
  257-  308 (65.57/16.31)	MQSSQQPMMQQ........I........SSGLQPGQSIPQTQ.SMVQSA...SQ...GGI.....QQ.NQL.....NSVPQ.....SV.QSL
  310-  377 (64.07/15.73)	QQPTQSAMRQQqhsqssmhP........QPSLQQAQQTQQPNIP.LQPHlmgQQ...QNL.....QQ.NQLIgqqnGAV.DM...PQ..QQR
  388-  443 (106.83/32.27)	MQQTQQMMNQQ........S........MPSHQQQQLGSQANISTLQQQ...QQ...QNQ.....QQ.QQLL....GTVPNV...PNI.QQR
  481-  513 (46.58/ 8.97)	..........Q........S............QQQHLMSQ.....F..Q...AQ...PNQ.....LQ.QQ.L....G.IPQQ...PSM.QQR
  630-  690 (39.75/ 6.32)	IMSTLQ.MNKG........SiqhglrekIPVYERQII....NI..LNSQ...KRprsQGQ.....TQfQQSA....GQGPT....SNIaQQP
  694-  736 (49.45/10.08)	LQQHDNHTNQI........P........QASMQSMSTG.......LQSS...GA...AGI.....QH...........LPAS...PAT.NFG
  737-  790 (57.95/13.36)	VPTQQNVTNAP........Q........AASNLEVTQGS..NYNSLQHG...SM...SGA.....LQ.QGST....GSMQGT...LNA.QQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     200.74|      33|      65|     858|     890|       2
---------------------------------------------------------------------------
  802-  831 (39.25/15.38)	..SA......FPISSPQNLQASSPQISHHSPQVDQH.NL
  832-  857 (38.60/14.99)	LPSQ........VKTGTP...LQSA..NSPYMPSPSPPV
  858-  890 (53.02/23.53)	APSP......IPVDSEKPLSNLSSSLTNTGQATHQHTSM
  891-  927 (37.39/14.27)	VPQTqsiavnTPGISASPL..LAEFTSVDGNQANMPTQV
  929-  953 (32.48/11.36)	TKSS.........AAERPLDRLLKALRTT.....QRESL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.75|      11|      29|       4|      14|       4
---------------------------------------------------------------------------
    4-   14 (23.64/13.19)	GGNWRPTQGSD
   34-   44 (22.11/11.81)	GGDWRSQLQSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03335 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IINILNSQKRPRSQGQTQFQQSAGQGPTSNIAQQPSQGLQQHDNHTNQIPQASMQSMSTGLQSSGAAGIQHLPASPATNFGVPTQQNVTNAPQAASNLEVTQGSNYNSLQHGSMSGALQQGSTGSMQGTLNAQQQASGSMLSHNSGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQHTSMVPQTQSIAVNTP
2) ISLKMLSMETKTNQNPGNAQVIQNQNPTGPVPGLPQGSNPAQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNMSGVNQTATLQNMSGIPQNSMNNGLAQGTSQDIYATQRQIAGRQQQQQQSQNQLI
3) MDGGGNWRPTQGSDPATVAAAAGGIDPNAPAPAGGDWRSQLQSEAR
4) PLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRT
5) QKLQQNSLIQPHIQQQQSLLQSTQMQSSQQPMMQQISSGLQPGQSIPQTQSMVQSASQGGIQQNQLNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQQTQQPNIPLQPHLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMMNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQQRMHMLQTKAAVQQPQQQLHGQQSSLGLMPPQSQHNQLQQSQQQHLMSQFQAQPNQLQQQLGIPQQPSMQQRLQTSAGMLL
6) SNIDQQKQFMQAPRGLQEVSSSTSVDSTAQTGHAGTGVGD
656
97
1
908
233
525
902
223
46
947
522
564










Molecular Recognition Features






MoRF SequenceStartStop




NANANA