<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03334

Description Uncharacterized protein
SequenceMDGGGNWRPTQGSDPATVAAAAGGIDPNAPAPAGGDWRSQLQSEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTNQNPGNAQVIQNQNPTGPVPGLPQGSNPAQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNMSGVNQTATLQNMSGIPQNSMNNGLAQGTSQDIYATQRQIAGRQQQQQQSQNQLIYQQQQMLMKQKLQQNSLIQPHIQQQQSLLQSTQMQSSQQPMMQQISSGLQPGQSIPQTQSMVQSASQGGIQQNQLNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQQTQQPNIPLQPHLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMMNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQQRMHMLQTKAAVQQPQQQLHGQQSSLGLMPPQSQHNQLQQSQQQHLMSQFQAQPNQLQQQLGIPQQPSMQQRLQTSAGMLLQQSNIDQQKQFMQAPRGLQEVSSSTSVDSTAQTGHAGTGVGDWQEETYQMLKNLKDHYLAELNDLYNKISLKLQHVDNMATPQKQTDQYEKMKSFKGMLERIMSTLQMNKGSIQHGLREKIPVYERQIINILNSQKRPRSQGQTQFQQSAGQGPTSNIAQQPSQGLQQHDNHTNQIPQASMQSMSTGLQSSGAAGIQHLPASPATNFGVPTQQNVTNAPQAASNLEVTQGSNYNSLQHGSMSGALQQGSTGSMQGTLNAQQQASGSMLSHNSGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQHTSMVPQTQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRESLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGAGTSKKMKRDTSAMPLNVSSAGSVNDSFKQTYSMGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDAESFGATSEGAEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWESCNGGKGYR
Length1217
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.03
Grand average of hydropathy-0.710
Instability index72.17
Isoelectric point9.01
Molecular weight132367.33
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03334
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     182.44|      27|      27|     372|     398|       1
---------------------------------------------------------------------------
  337-  359 (35.10/ 8.58)	QQTQQPN.....IP..LQPHLMGQQQNL....QQ
  360-  391 (40.30/11.27)	NQLIGQQngavdMP..QQQRLPVQSNNLLNMQQT
  392-  420 (35.56/ 8.81)	QQMMNQQ....sMPshQQQQLGSQA.NISTLQQQ
  421-  443 (34.79/ 8.42)	QQQ.NQQ..........QQQLLGTVPNVPNIQQR
  475-  500 (36.69/ 9.40)	QHNQLQQ.....S...QQQHLMSQFQAQPNQLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     792.95|     196|     202|     504|     703|       3
---------------------------------------------------------------------------
   49-  202 (149.18/39.40)	....................................IVNKIMETLKKHlPVSVPEGLNElqKIAVrFEEKIytaatsqsdylrkisLKMLSMEtKTNQNPGNAQVIQN..QNPTG.....PVPGL.......................................................PQGSNPAQS...SAIPLMSQ...QQARQ....P.....................NSTSVQSSlTNLGQNMSG.VN..QTATL..QNMsgipQNSMNNGLAQgtSQDIY
  231-  333 (105.83/25.71)	MK..QKLQQ.NSLIQPhiQQQQSllQSTQMQSSqQPMMQQISSGL........QPG..Q..SIP.....QT...............QSMVQSA.SQGGIQ.QNQL.NSVPQS.VQSLLQQPTQSAmrQ....QQHSQSSMHPQPSL..............................................................................................................................................
  454-  588 (119.67/31.85)	......................................................................................................................QQPQQQL..H...gQQSSLGLMPPQ...sqhnqlqqsqqqhlmsqfqaqpnqlqqqlgIPQQPSMQQRLQT...SAGMLLQQSNiDQQKQFMQAP..............RGLQEVSSSTSVDST.AQTGHAGTG.VGDWQEETY..QML....KNLKDHYLAE..LNDLY
  589-  755 (258.23/79.39)	NKisLKLQHvDNMATP..QKQTD..QYEKMKSF.KGMLERIMSTLQMN.KGSIQHGLRE..KIPV.YERQI...............INILNSQ.KRPRSQGQTQFQQSAGQGPTSNIAQQPSQGL..Q....QHDNHTNQIPQASM...........................................qsmSTG..LQSS..........GA..............AGIQHLPASPATN..........FG.VPTQQNVTNapQAA....SNLE...VTQ..GSN.Y
  756-  889 (160.04/43.29)	N....SLQH...........G..........SM.SGALQ......QGS.TGSMQGT.................................LNAQ.Q..QASGSMLSHNSGSAFPISS.....PQNL..QasspQISHHSPQVDQHNL..............................LPSQ........V...KTGTPLQSAN....SPYMPSPsppvapspipvdseKPLSNLSSS..LTNT.GQATHQHTSmVPQTQ..............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.75|      11|      28|       4|      14|       4
---------------------------------------------------------------------------
    4-   14 (23.64/13.58)	GGNWRPTQGSD
   34-   44 (22.11/12.17)	GGDWRSQLQSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.44|      54|     202|     891|     946|       5
---------------------------------------------------------------------------
  891-  946 (82.18/41.68)	IAVNTPG..ISASPLLAEFTSVDGNQANMPTQV..LTKSSAAERPL........DRLLKalRTTQRES
  949- 1014 (73.27/32.83)	AAVSDIGsvVSMIDRIAGSAPGNGSRAAVGEDLvaMTKCRLQARNFithdgagtSKKMK..RDTSAMP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03334 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IINILNSQKRPRSQGQTQFQQSAGQGPTSNIAQQPSQGLQQHDNHTNQIPQASMQSMSTGLQSSGAAGIQHLPASPATNFGVPTQQNVTNAPQAASNLEVTQGSNYNSLQHGSMSGALQQGSTGSMQGTLNAQQQASGSMLSHNSGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQHTSMVPQTQSIAVNTP
2) ISLKMLSMETKTNQNPGNAQVIQNQNPTGPVPGLPQGSNPAQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNMSGVNQTATLQNMSGIPQNSMNNGLAQGTSQDIYATQRQIAGRQQQQQQSQNQLI
3) MDGGGNWRPTQGSDPATVAAAAGGIDPNAPAPAGGDWRSQLQSEAR
4) PLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRT
5) QKLQQNSLIQPHIQQQQSLLQSTQMQSSQQPMMQQISSGLQPGQSIPQTQSMVQSASQGGIQQNQLNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQQTQQPNIPLQPHLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMMNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQQRMHMLQTKAAVQQPQQQLHGQQSSLGLMPPQSQHNQLQQSQQQHLMSQFQAQPNQLQQQLGIPQQPSMQQRLQTSAGMLL
6) SNIDQQKQFMQAPRGLQEVSSSTSVDSTAQTGHAGTGVGDWQEE
650
97
1
902
233
525
896
223
46
941
522
568










Molecular Recognition Features






MoRF SequenceStartStop




NANANA