<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03328

Description Uncharacterized protein
SequenceMVAAGGGEGGEMERRVMAALKASEARGDQPLVWAVEVARVVAGEEEGTAGLPSADLAGILVSNLCFAHNSPSLWKLVGHAVASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELMKCNVTSSFLAMEPGPNRDKITKSIDGALQLSKIYGFSEIDVGHVIIFFMMFVITKLIDCILEDCGFPSGLTQDQESIYAIQGPQGMDLDAKGVYTEKQNEHRAQLRRKNTVMALDVLLMMVADRKIQSFLRLILLNMPDKFSALSQRLSLVESHKLDLETVLTANDKIYDLLMNIQRVSNTAYLPNNKRLLGVLGNMKYSGSMLGQFAGAGRAACWVIFDIYVENAIDGKHLSAISAIEILKETTKTLQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDSRLCMLLALIPLSIGAILKEETDVSGTEGNKILPKRLGLISSLQDLVLYSGLLVPPSSVVNAANAAASKAAIYKANYKPGGGNPGMMGQNDSSTKAVGNMLHLIVEACISRNLIDTTAYLWPGYVMSSGHLKDVALPQESPWLNFMQGAPLSSPLIDDLIATPASSIAELDRLYHIALNGSEEEKSAAAKILCGASFVCGWNIQEYAVRMVIKLLSPPLPSNSSTQGSVSHYLAQMSTLNSLLLGISYGDAIHIISLYGMVPDVAAALMPICEAFGSIPPPSNHRSNSAGEISVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMHNNLIDFPNSSAASRNSSNNIGPLNEVPTQPVYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILSMIYRKMNKPGVPSGNLSSTSSGSVSGSSVSTSDDSYQRPTVPAWEFLEAVPFVLEALLTACAHGRFSSRELTTSLRDLVDFMPASIAVITTYFSAEITRGIWKTVPMNGTEWPSPGASLHSIEAEIKEVLASAGIQIPSCYPRGVPPMLPLPMAALVSLTITFKLDKNLEYIHAIIGQALENCAGGSSWPSMPIIGALWAQKVRRWHDFIVLSCLRSPFGRDKDAVEQLIRSCFSSFLRSSFSGFDITANRGVGALMGESITGQGLQLPMAPGFIYLRTCRTFNDTYFVSEVILKQVLEWADKLANGWSSNGPPNLKSGRMPLSGAASMAHQVAMLGAGLLCVAGGPLVIQVLYEETLPTLLLSAREQSMKDPRPVSSTLQGYAMANMLFFCGSLLWGAERTSPMLKLSFLSRRPRVVGTHMDFMAGVLDGHILLGCDHGTWKAYVSRFVFLVVKFVPSWLRDIKLDTLKKIAAGLRSWNEHDLALALLERGGPQAISTVVETLL
Length1320
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.08
Grand average of hydropathy0.141
Instability index46.75
Isoelectric point7.71
Molecular weight143654.08
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03328
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.57|      37|      41|     480|     518|       1
---------------------------------------------------------------------------
  480-  518 (62.30/45.01)	Y.KPGG.GNPGMMgqNDSSTKAVGNMLHLIVEACISRNLID
  522-  560 (62.26/38.39)	YlWPGYvMSSGHL..KDVALPQESPWLNFMQGAPLSSPLID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     142.15|      38|      41|     934|     971|       2
---------------------------------------------------------------------------
  935-  978 (58.87/25.17)	HSIEAEIKEVLAS......AGIQIPSCYPRGVPPM.........LPLPMAALvsltitF
  979- 1014 (51.97/21.50)	.KLDKNLEYIHAI......IGQALENCAGGSSWPS.........MPI.IGAL......W
 1039- 1086 (31.31/10.52)	DAVEQLIRSCFSSflrssfSGFDITA..NRGVGALmgesitgqgLQLPMA.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.09|      24|      39|     824|     847|       3
---------------------------------------------------------------------------
  824-  847 (40.02/24.95)	PGVPSGNLSSTSSGSVSGSSVSTS
  866-  889 (41.07/25.82)	PFVLEALLTACAHGRFSSRELTTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.43|      17|      39|     231|     247|       4
---------------------------------------------------------------------------
  231-  247 (28.12/23.78)	LDVLLMMVADRKIQSFL
  273-  289 (27.31/22.84)	LDLETVLTANDKIYDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     179.36|      41|      44|    1170|    1212|       5
---------------------------------------------------------------------------
 1128- 1165 (47.21/25.64)	....PPNLKSGR...MPLSGAASMAHQ....VAMLGAGLLCvagGPLVI
 1170- 1212 (68.28/46.52)	EETLPTLLLSAREqsMKDPRPVSSTLQ...GYAMANMLFFC...GSLLW
 1215- 1257 (63.87/37.50)	ERTSPMLKLSFLS...RRPRVVGTHMDfmaGVLDGHILLGC...DHGTW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.61|      19|      33|     396|     415|       6
---------------------------------------------------------------------------
  396-  415 (30.80/20.45)	EGPiPHLDSRLCMLLALIPL
  431-  449 (31.82/16.71)	EGN.KILPKRLGLISSLQDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.11|      34|      99|     584|     621|       7
---------------------------------------------------------------------------
  584-  621 (53.78/43.18)	SEEEKSAAAKILCGASFVCGWniqeYAVRMVIKLLSPP
  685-  718 (62.33/40.08)	SNHRSNSAGEISVYSVFSCAF....LCLLRLWKFYKPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.30|      11|      71|     777|     787|       9
---------------------------------------------------------------------------
  777-  787 (23.92/12.31)	DSF..PKLRAWYF
  849-  861 (19.39/ 8.73)	DSYqrPTVPAWEF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03328 with Med33 domain of Kingdom Viridiplantae
Unable to open file!