<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03327

Description Uncharacterized protein
SequenceMQRYAGGSNNSGFSGGGGGGAGGGRGDSSRLDGSPFSNSNYPLSSRRQQQLAPYKLKCDKEQLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIQHFCKPDVVAKCKEALKKRLRAINESRAQKRKALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSASISTSAGGSDNHRSNQWTNDVVEYIQQLLDEFCLKEVPPSFREQSSPGLIAGATQVKMKSEAPPAIGDTEEPSVQFKWWYMVRLIQWHLTEELLVPSVLIEWLFNQLQERVAVEALELLLPVALGMIDTIILSQTYVRMFVEILVRRLSDGPVVDNPKRAYISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKISGGGGIANSKRQDAYRYLSCGYAVCSIQKRSHDLATVANPNSQARGTAKVVQALDKALVTGNLTMAYMSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSVFFLCEWATCDYRDCRTSLSQNVKFTGRRDLSQIHLAVYILKNKMDEINNLSRSKSSSHIAVNNTVKGSSLNDTSAATVGDSSGLRNNAKSMDEKDKKDIFESPGPLHDIIVCWLDQHEVSSAAGFKRVDVLIIELICSGIFYPQAYVRQLIISGITDKSDTLLDMERKRRHHRILKQLPGSSLFEIIEEDRVDEEQQLYEMMSTYSSERRLVLSELSSGQSFYANSRGEYTSNSCVLKPSDLLASGGDKHVRVPEQVEDVKALVSSMLRLTNSHSLEAEHCQIKTNTQGSSASTLTQVDTVDVKNDCEDCARTKRQKLDESTSPLQGFPLIQSDEEDIWWVRKGTKLHESFKAEPAQKSIKQTSRGRAKVVRKTQSLAQLAASRIEGSQGASTSHLCESKVGCSHHKPSIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSLWYENILRATDLLPEVLSASMNRNFVLATARQPASAAFAYTRYFLKKYRDVASVARWEKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQIRQKLNVRNSRIVSSMKEIIQRQTEEGQYNLKEKKVSAAPKSPSVDREDSYQISHDIVMGLLECIRQNGGASLDGDPSIVASAVSAIVLNAGHAIAKQLDFVGSYQGVPSMGSSLSSVRHTLHIHISSLCLLKDALGDRFSRVFEIALAVEASSAITATFVPPKMQRNQFQPSPEAHDVYGNHTNDTGKGFIGRATKVAAAISALVVGAIIHGVVNLERMVAVLKIKEGLDILQLLRGLRSSSNGVSRSTGTFKMENSAEVLVHWFRIMLGNCRTVYDGLISDILGESYVLALSRLQQVLPLSMVLPPAYSIFAMVLWKRYTFSREDVQLYQSLSSAINDIIIHQSFRDICFRNTHQLYDLLAADVGDSEFAAMLEMHSQDKSSKAMTFIPLRARLFLNALVDCKTPGAIAGDGSCASDSAETKDNELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAETFALSDSEKGFTEIILSRLLARPGAAPLYSEVVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWSSLLSDVMANKSIKRKLEVTSIEEGEVVDDSADAKRPSKATPYNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAVSNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADR
Length1806
PositionKinase
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.07
Grand average of hydropathy-0.260
Instability index50.37
Isoelectric point8.61
Molecular weight200222.09
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03327
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.65|      17|     578|     258|     278|       1
---------------------------------------------------------------------------
  258-  278 (29.62/29.23)	KSEAP....PAIGDTEEPSvqfkWW
  834-  854 (29.02/17.41)	ESTSPlqgfPLIQSDEEDI....WW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.39|      61|     198|     150|     224|       2
---------------------------------------------------------------------------
  159-  222 (100.01/95.83)	VPHGYRRKSLLDVLTRYNVPLLR...ATWFVKVTY.LNQPQVRSASISTSAGGSDNHRSnqwTNDVVE
  393-  457 (95.38/56.69)	VPDVYSRGALLKISGGGGIANSKrqdAYRYLSCGYaVCSIQKRSHDLATVANPNSQARG...TAKVVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.51|      31|     160|     740|     774|       3
---------------------------------------------------------------------------
  740-  774 (45.13/40.86)	SRGEYTSNSCvlkPSDLLASGGDKHVRVpEQVEDV
  902-  932 (56.38/36.44)	SQGASTSHLC...ESKVGCSHHKPSIDV.DNVKDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     229.54|      79|     229|    1134|    1219|       4
---------------------------------------------------------------------------
 1134- 1219 (110.45/81.87)	PsivASAVSAIVLNAGHAIAKQlDfVGSYQGVPSMGSSL...SSVRHTLHIHISSLC.LLKDALGD.RFSRVFEIALAVEASSAItaTFVP
 1365- 1448 (119.09/68.04)	P...AYSIFAMVLWKRYTFSRE.D.VQLYQSLSSAINDIiihQSFRDICFRNTHQLYdLLAADVGDsEFAAMLEMHSQDKSSKAM..TFIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.36|      52|     799|     504|     565|       8
---------------------------------------------------------------------------
  504-  565 (77.01/76.75)	GTVELSLICSVffLCEWATCDYRDCRTSlsqnvkFTGRrdLSQIHLAVYILK.NKMDEINNLS
 1308- 1360 (86.35/57.57)	GTFKMENSAEV..LVHWFRIMLGNCRTV......YDGL..ISDILGESYVLAlSRLQQVLPLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.67|      35|     154|    1547|    1607|      12
---------------------------------------------------------------------------
 1487- 1527 (48.86/49.84)	LSDRLIQLLDTLQPAkfhwqwVELRFLLD.EQALLEKVAAGN
 1570- 1607 (48.81/28.82)	LYSEVVHLLGKLQES....lvVDVKWLLQgQDALLGRKSTRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03327 with Med12 domain of Kingdom Viridiplantae
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