<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03326

Description Uncharacterized protein
SequenceMQRYAGGSNNSGFSGGGGGGAGGGRGDSSRLDGSPFSNSNYPLSSRRQQQLAPYKLKCDKEQLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIQHFCKPDVVAKCKEALKKRLRAINESRAQKRKAGQVYGVPLFGSLLIKPGVYPEQRPCNEDTRRKWAEALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSASISTSAGGSDNHRSNQWTNDVVEYIQQLLDEFCLKEVPPSFREQSSPGLIAGATQVKMKSEAPPAIGDTEEPSVQFKWWYMVRLIQWHLTEELLVPSVLIEWLFNQLQERVAVEALELLLPVALGMIDTIILSQTYVRMFVEILVRRLSDGPVVDNPKRAYISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKISGGGGIANSKRQDAYRYLSCGYAVCSIQKRSHDLATVANPNSQARGTAKVVQALDKALVTGNLTMAYMSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSVFFLCEWATCDYRDCRTSLSQNVKFTGRRDLSQIHLAVYILKNKMDEINNLSRSKSSSHIAVNNTVKGSSLNDTSAATVGDSSGLRNNAKSMDEKDKKDIFESPGPLHDIIVCWLDQHEVSSAAGFKRVDVLIIELICSGIFYPQAYVRQLIISGITDKSDTLLDMERKRRHHRILKQLPGSSLFEIIEEDRVDEEQQLYEMMSTYSSERRLVLSELSSGQSFYANSRGEYTSNSCVLKPSDLLASGGDKHVRVPEQVEDVKALVSSMLRLTNSHSLEAEHCQIKTNTQGSSASTLTQVDTVDVKNDCEDCARTKRQKLDESTSPLQGFPLIQSDEEDIWWVRKGTKLHESFKAEPAQKSIKQTSRGRAKVVRKTQSLAQLAASRIEGSQGASTSHLCESKVGCSHHKPSIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSLWLLKSVRQLIEVNEMTAKGSNSISSFSLQSDDKALSKWRLGDEDLLSILYILDICCDLASGARFLVWLLAKVRGGMATSGQTGRSSTHIKNRENQVCQVGEALVFSSLLRYENILRATDLLPEVLSASMNRNFVLATARQPASAAFAYTRYFLKKYRDVASVARWEKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQIRQKLNVRNSRIVSSMKEIIQRQTEEGQYNLKEKKVSAAPKSPSVDREDSYQISHDIVMGLLECIRQNGGASLDGDPSIVASAVSAIVLNAGHAIAKQLDFVGSYQGVPSMGSSLSSVRHTLHIHISSLCLLKDALGDRFSRVFEIALAVEASSAITATFVPPKMQRNQFQPSPEAHDVYGNHTNDTGKGFIGRATKVAAAISALVVGAIIHGVVNLERMVAVLKIKEGLDILQLLRGLRSSSNGVSRSTGTFKMENSAEVLVHWFRIMLGNCRTVYDGLISDILGESYVLALSRLQQVLPLSMVLPPAYSIFAMVLWKRYTFSREDVQLYQSLSSAINDIIIHQSFRDICFRNTHQLYDLLAADVGDSEFAAMLEMHSQDKSSKAMTFIPLRARLFLNALVDCKTPGAIAGDGSCASDSAETKDNELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAETFALSDSEKGFTEIILSRLLARPGAAPLYSEVVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWSSLLSDVMANKSIKRKLEVTSIEEGEVVDDSADAKRPSKATPYNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAVSNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRTMRHTLASAILGLLAARIIYEDADLPLPPTNVTVLRREMDSLLEPPLDVLLDRPGESLFERLICVLHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFDSEAAEGLQSSLDHLELPGVIRRRIQAAMPVLPPSRHPSVSCQPPQLSLAALSPLQSSTSTSGPQQKGTSNSWVPTNISIRNKAAFATQDPEMEVDPWTLLEDGTSCPSVSSGSNSSSGIAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2202
PositionKinase
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-0.250
Instability index50.40
Isoelectric point8.50
Molecular weight243204.58
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03326
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.16|      40|      58|     231|     273|       1
---------------------------------------------------------------------------
  231-  273 (63.08/47.66)	QVRSASISTSAGGSDNHRSNQ..WTNdVVEYIQQLLDEFCLkeVP
  290-  331 (70.08/42.69)	QVKMKSEAPPAIGDTEEPSVQfkWWY.MVRLIQWHLTEELL..VP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.10|      29|      58|    2101|    2129|       2
---------------------------------------------------------------------------
 2101- 2129 (50.85/29.48)	SPLQSSTSTSGPQQKGTSNSWVPTNISIR
 2160- 2188 (50.25/29.04)	SGSNSSSGIAGDHGNLKACSWLKGAVRVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.60|      20|      63|     997|    1021|       3
---------------------------------------------------------------------------
  997- 1021 (29.78/30.42)	WLLKSVRqlievNEMTAKGSNSISS
 1063- 1082 (36.82/24.16)	WLLAKVR.....GGMATSGQTGRSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.58|      46|      62|    1980|    2027|       7
---------------------------------------------------------------------------
 1980- 2027 (71.69/43.72)	PTNVTVLRREMDSLLEPPLDvLLDRPGeSLFERLICVLHALLGNGKPS
 2042- 2087 (79.89/41.74)	PRDFPAFDSEAAEGLQSSLD.HLELPG.VIRRRIQAAMPVLPPSRHPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.75|      35|      62|    1591|    1625|       8
---------------------------------------------------------------------------
 1591- 1625 (60.68/40.59)	FIPLRARLFLNALVDCKTPG..AIAGDGSCASDSAET
 1652- 1688 (52.08/33.66)	WVELRFLLDEQALLEKVAAGntSVAEAIQSLSPNAET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.43|      13|     238|     195|     207|      12
---------------------------------------------------------------------------
  195-  207 (24.36/17.81)	VPHGYRRKSLLDV
  429-  441 (23.06/16.34)	VPDVYSRGALLKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.87|      27|      81|    1460|    1486|      19
---------------------------------------------------------------------------
 1460- 1486 (51.01/37.26)	SA..EVLVH.WFR.IMLGNCRTVYDGLISDI
 1538- 1568 (35.85/23.82)	SAinDIIIHqSFRdICFRNTHQLYDLLAADV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03326 with Med12 domain of Kingdom Viridiplantae
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