<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03325

Description Uncharacterized protein
SequenceMQRYAGGSNNSGFSGGGGGGAGGGRGDSSRLDGSPFSNSNYPLSSRRQQQLAPYKLKCDKEQLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIQHFCKPDVVAKCKEALKKRLRAINESRAQKRKAGQVYGVPLFGSLLIKPGVYPEQRPCNEDTRRKWAEALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSASISTSAGGSDNHRSNQWTNDVVEYIQQLLDEFCLKEVPPSFREQSSPGLIAGATQVKMKSEAPPAIGDTEEPSVQFKWWYMVRLIQWHLTEELLVPSVLIEWLFNQLQERVAVEALELLLPVALGMIDTIILSQTYVRMFVEILVRRLSDGPVVDNPKRAYISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKISGGGGIANSKRQDAYRYLSCGYAVCSIQKRSHDLATVANPNSQARGTAKVVQALDKALVTGNLTMAYMSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSVFFLCEWATCDYRDCRTSLSQNVKFTGRRDLSQIHLAVYILKNKMDEINNLSRSKSSSHIAVNNTVKGSSLNDTSAATVGDSSGLRNNAKSMDEKDKKDIFESPGPLHDIIVCWLDQHEVSSAAGFKRVDVLIIELICSGIFYPQAYVRQLIISGITDKSDTLLDMERKRRHHRILKQLPGSSLFEIIEEDRVDEEQQLYEMMSTYSSERRLVLSELSSGQSFYANSRGEYTSNSCVLKPSDLLASGGDKHVRVPEQVEDVKALVSSMLRLTNSHSLEAEHCQIKTNTQGSSASTLTQVDTVDVKNDCEDCARTKRQKLDESTSPLQGFPLIQSDEEDIWWVRKGTKLHESFKAEPAQKSIKQTSRGRAKVVRKTQSLAQLAASRIEGSQGASTSHLCESKVGCSHHKPSIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSLWLLKSVRQLIEVNEMTAKGSNSISSFSLQSDDKALSKWRLGDEDLLSILYILDICCDLASGARFLVWLLAKVRGGMATSGQTGRSSTHIKNRENQVCQVGEALVFSSLLRYENILRATDLLPEVLSASMNRNFVLATARQPASAAFAYTRYFLKKYRDVASVASR
Length1161
PositionKinase
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.07
Grand average of hydropathy-0.337
Instability index50.62
Isoelectric point8.69
Molecular weight129619.21
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03325
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.25|      27|     138|     524|     552|       1
---------------------------------------------------------------------------
  524-  552 (45.33/37.00)	WI..KEVSPclQSSLMWIGTVELSLICS.VFF
  663-  692 (38.92/24.11)	WLdqHEVSS..AAGFKRVDVLIIELICSgIFY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.84|      32|      56|     112|     143|       3
---------------------------------------------------------------------------
  112-  143 (57.25/37.14)	QHFCKPDVVAKCKEAL...KKRLRAINE..SRAQKRK
  166-  202 (50.59/31.98)	QRPCNEDTRRKWAEALsqpNKRLRSLSEhvPHGYRRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.87|      32|     425|      16|      52|       4
---------------------------------------------------------------------------
   16-   52 (53.93/42.68)	GGGGGAGGGRGDSSRldgspFSNSNYPLSS..RRQQQLA
  443-  476 (55.94/32.62)	GGGGIANSKRQDAYR.....YLSCGYAVCSiqKRSHDLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.38|      39|      56|     231|     273|       5
---------------------------------------------------------------------------
  231-  273 (59.45/53.36)	QVRSASISTSAGGSDNHRSNQWTndvVEYIQQLLdEFCLKE...VP
  290-  331 (68.92/47.26)	QVKMKSEAPPAIGDTEEPSVQFK...WWYMVRLI.QWHLTEellVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.81|      55|     219|     600|     657|       6
---------------------------------------------------------------------------
  600-  657 (85.73/72.47)	LSRSKS..SSHIAVNNTVKGSSlndTSAATVGDSSGLRNNAKSMDEKDKKDIFESPGPLH
  820-  876 (89.08/66.32)	LTNSHSleAEHCQIKTNTQGSS...ASTLTQVDTVDVKNDCEDCARTKRQKLDESTSPLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.84|      25|      49|     352|     376|       7
---------------------------------------------------------------------------
  352-  376 (42.64/31.67)	ELLLPVALGMIDTII.LSQTYVRMFV
  403-  428 (41.20/30.34)	ELLRYMVLAVPDTFVsLDCFPLPSFV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03325 with Med12 domain of Kingdom Viridiplantae
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