<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03323

Description Uncharacterized protein
SequenceMDAAVDEISEAYGELLAAAVAVVEARSLSGGENTAATMEAIEALRQREEQFRAACDHGDERLDRIRSRILAGDEVLDEAATVDGGGGDGDGEDHLSSLPDDVLRLILLCLPSAAAAARTCLISRRWRNLWSTLPELQFPGVTDLARVRAALLLHTAPVLHNLDNRTPHEIAAVLDVAAPRLAGGLWFHTSVISATPSHRIDAHCYESSLSAELKAIRSKSLLQVYLFEMGELQQLTIVAPMLRELSVSGCFNVVAPIADISAHVLEELQWIDYFSFSSVRLGVLPLPRLQRLAAFGDVYGLSTADPHLRSLSLLQRCKAAHEVHITLIYPPWTVMDDYKLLVEAVNTLPDMEILSLKLVAVGHAFGPCVFHLLRMSSGIIELNLELDCVKDGRVVCPSSCICYKKRDWETSNIRLNLLQKIVINNLSASKRQIFFVKQLLRWAPLLKTITVTFHPSARVSEEVCKELLRFSAPRICMEIYLHRNGAKERYSGTMDAAVDEMRKSYGELVAAVAAVVEARGQSGGENTAAMVAATEALKQRVELFRVACDHGEERLDWIRNLIFVDGKTAASFYSSTSSRFGARAPSDEDLFSALSDEVLRRILLSLPSAAAAARTSLISRRWRSLWYTLPELRFLDVADLARVSAALRLHAAAPVLHNLHIDSSDLAAHKFAAVLDMAAPRLAGGLRFDMASTAVSAEIGGDLELEIPCFPKATQIELRFGYLRIRLPSFAVFGKLTVLRLCDVLFNSQYNLGEAVSSDRCPSLQVLNLHRAKGLSNLAIRSESLLVADLSHLGGLQQLTIVAPRLTDLGVSRCFNVVSPVADISTPLLEALRWIDYFSWSSVRFSVMKRLRRLKVCGLVYGVPTTDPLTRSLQLLERYTAVPDVHLSLFYPCVTIDDNCNYVVQAVHTLSSVKILSLKLDGIVPCFSGCICYKPPDWETMDICLNLLQKVEINNLSGAEVEIFFVERLLIWAPVLKMITLTFDPSVRVGKEVCKKLLSLSTAAICMEMALRRSIDHQ
Length1018
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.07
Grand average of hydropathy0.188
Instability index46.88
Isoelectric point6.26
Molecular weight112410.97
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03323
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      89.79|      13|      15|      13|      25|       1
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   13-   25 (21.77/12.63)	GELLAAAVAVVEA
   31-   43 (22.85/13.61)	GENTAATMEAIEA
  506-  518 (21.23/12.13)	GELVAAVAAVVEA
  524-  536 (23.94/14.61)	GENTAAMVAATEA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     740.98|     231|     495|       1|     317|       2
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    1-  270 (410.01/307.87)	MDAAVDEISEAYgellaaavavveaRSLSGgentaatmeaieaLRQREEQFRAACDHGDERLDRIRSRILagdevldeaatVDG..............GGGDGDGEDHLSSLPDDVLRLILLCLPSAAAAARTCLISRRWRNLWSTLPELQFPGVTDLARVRAALLLH.TAPVLHNL..DNR..TPHEIAAVLDVAAPRLAGGLWFHTSviSATPSHRIDAH......CYESSLSAELKAIRSKSLLQVYLFEMGELQQLTIVAPMLRELSVSGCFNVVAPIADISAHVLEELQW
  494-  719 (258.54/167.58)	MDAAVDEMRKSYgelvaavaavveaRGQSGgentaamvaateaLKQRVELFRVACDHGEERLDWIRNLIF...........VDGktaasfysstssrfGARAPSDEDLFSALSDEVLRRILLSLPSAAAAARTSLISRRWRSLWYTLPELRFLDVADLARVSAALRLHaAAPVLHNLhiDSSdlAAHKFAAVLDMAAPRLAGGLRFDMA..STAVSAEIGGDleleipCFPKATQIELR........................................................
  767-  834 (72.43/113.48)	....................................................................................................................................................................LNLH.RAKGLSNL..............................................................AIRSESLLVADLSHLGGLQQLTIVAPRLTDLGVSRCFNVVSPVADISTPLLEALRW
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     149.61|      31|      31|     354|     384|       3
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  354-  384 (52.52/31.92)	LSLKLVAVGHAFG..P..CVFHLLR.MSSGIIELNL
  386-  417 (45.03/26.31)	..LDCVKDGRVVC..PssCICYKKRdWETSNIRLNL
  916-  947 (52.06/31.58)	LSLKL..DGIVPCfsG..CICYKPPdWETMDICLNL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     149.63|      23|      24|     272|     294|       4
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  272-  294 (38.40/22.81)	DYFSFSSVRLGVLPLPRLQRLAA
  297-  319 (39.85/23.95)	DVYGLSTADPHLRSLSLLQRCKA
  836-  856 (35.42/20.45)	DYFSWSSVRFSV..MKRLRRLKV
  859-  881 (35.95/20.87)	LVYGVPTTDPLTRSLQLLERYTA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     248.63|      66|     528|     418|     483|       5
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  418-  483 (125.82/92.34)	LQKIVINNLSASKRQIFFVKQLLRWAPLLKTITVTFHPSARVSEEVCKELLRFSAPRICMEIYLHR
  948- 1013 (122.81/89.93)	LQKVEINNLSGAEVEIFFVERLLIWAPVLKMITLTFDPSVRVGKEVCKKLLSLSTAAICMEMALRR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.96|      32|     561|     322|     353|       6
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  322-  353 (59.78/40.82)	EVHITLIYPPWTVMDDYKLLVEAVNTLPDMEI
  884-  915 (59.18/40.35)	DVHLSLFYPCVTIDDNCNYVVQAVHTLSSVKI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03323 with Med32 domain of Kingdom Viridiplantae
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