<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03322

Description Uncharacterized protein
SequenceMLARTLLYGGGGGGCGAVWKYAEAALAARLASPALLLALLSTRVIPQRFTKPTAYRLYLELLRRHGFNFSFQMKAANFKKIMQLIDDNLGLSKLFGFSTCEPGGFVVEFTLCMLWQLVDAALDDEGLLELIPDKKVHWPTRSDDISAFDGTFSEERIEKIDKLQKMNNVITLELIGHLLHDKVITHILSLARENMQSQWVAFTKQLQVLITKSSTIQASTIALEAFEQLNLDVCNIFRENKHWSRRKFHPIMASNPLNSPHGRCLGASYSALWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRATWHDAFLGLWIASLRLVQREREPIEGPVPHLDTRLCMLLSITTLAIADIIEESDSELDSNRKEKSVSDDLRKELMLSLQTLGDYESLLVPPPCIIMAANQAASKAAMFVSEINISSGYMENVNDRTTNCSGNMWHLIVESCISRNLLETSAYCWPGYIDGHANSVTHALPNQLAAWSSFMKGAPLTQSLVHMLVTTPASSLAEVEKLFEVAVDGSDEDKVSAATILCGATLLRGWNFQEHTVRLVVKLLSSSDPVDLSGGESQLVKHGAMLNVIVAGISPVDYAPIFSFHGLIPELAAALMAICEVFGCLSPNVSWSLRTGEKISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVLSGRSSAKNRNIQKQLPVTSNPSSEHPIFMDSFPKLKLWYRQHQACLASTLSGFAHGAPVHKNVDSLLNLMFRKANKGSNSIGSLSGSSSLSNSSGPVGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLTDFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGIDVPRLVTGGSTLGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMPIVAALWTQKVKRWSDFLVFSASRTVFHHNNNSVFQLLRSCFTATLGMSSNTSVCSCGGIASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILNLLMLSVKDIAETTVSRHRSDNKLIKKTKHVMRHGQVSLSSAMTQVKVAASLGATLVWLSGGTALVQSLFQEMLPSWFLAVQDLERGGVASGGTVYKLGGHALAYFAVYAGMFAWGIDPTPAVSRRRERVMWSHFEFLAGALDGKISLGCDLSLWRAYVSGFLGLVVECTPSWVHEVDIRVLKRLSVGLRQWKEDDLAVALLRSAGPEAMGAAAEMILAFDW
Length1271
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.08
Grand average of hydropathy0.156
Instability index41.62
Isoelectric point6.68
Molecular weight138867.91
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03322
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     282.98|      68|      71|     655|     725|       1
---------------------------------------------------------------------------
  592-  651 (73.46/41.06)	............DYAPIFSfhGLIPELaAALMAICEVFGCLSP....NVSWSL.RTGEKI.SAHTVFSNA..FIlLLRLW
  655-  725 (116.16/78.95)	HpplEYCVMG..DGAPVGS..QLTPEY.LLLLRNSQVLSGRSSAKNRNIQKQLPVTSNPS.SEHPIFMDS..FP.KLKLW
  729-  797 (93.36/55.36)	H...QACLAStlSGFAHGA..PVHKNV.DSLLN....LMFRKANKGSNSIGSLSGSSSLSnSSGPVGDDShlWP.QLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.71|      33|     232|     111|     145|       3
---------------------------------------------------------------------------
  111-  145 (54.11/50.26)	LCMLWQLVDAALDD...EGLLELIPDKKVHwpTRSDDI
  345-  380 (49.60/36.04)	LCMLLSITTLAIADiieESDSELDSNRKEK..SVSDDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.56|      42|     716|     188|     229|       4
---------------------------------------------------------------------------
  188-  229 (67.54/44.11)	LSLARENMQSQWVAFTKQLQVLITKSSTIQASTIALEAFEQL
  872-  913 (68.03/44.48)	LSMVEEHIKKIVAATGIDVPRLVTGGSTLGTLPLPLAAFVSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.35|      28|     465|     518|     550|       6
---------------------------------------------------------------------------
  518-  550 (42.17/37.56)	FEVAVDGSDEDKVSAatilCG..ATLLrGWNFQEH
  988- 1017 (48.18/28.41)	FTATLGMSSNTSVCS....CGgiASLL.GHGFGSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.74|      11|      77|     857|     867|       7
---------------------------------------------------------------------------
  857-  867 (24.88/14.24)	PAFMN...GTDWPS
  932-  945 (19.86/ 9.83)	PALENlaaSCPWPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03322 with Med33 domain of Kingdom Viridiplantae
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