<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03320

Description Uncharacterized protein
SequenceMASSSSSSSAASSSQAAASAAEAAASSAGAIVVAVAVRGDGRASRRAARWAAANLAPGAARVALVHVIPPLSFVPTPSGERIPVEKMDAETVEMYAQDRRARAHDEVFLPLRRLFARTTVETVILEAESVTAALVAYAADSGVRNLVVGSTSLNWILRLRDVPSTVLKAMPCSCNVFVVSRHKLTIKFANQSRTGKSSSCVRTQSISHRSFSRIQKNWLLDKQSLHDQPEDGTLKSSGDASSDAGSHTCSSRSTSTNAGKSSESHGRGFFGSLGRKTPGRDVNGDFGAIGRLKEVPYVALSSIDESQPVDEVAKLRKELQDTLMMYDKACEDLVHAKKKIKVLSSECSEEAKKVQDALQKEVLLKQKVADEKTKHLEAITEVEMAKTLFAQEAYSKHKAEIVADMVTVEKTKVMDALLSTGKSCRRYSRREIQLATDNFSDAKKIGEGGYGNVYRCTLDHTEVAVKVLQQDSSDKIDEFLREVEILSQLHHPNLLLLLGFCPEIGCLVYEYMENGSLEDQLINNKGHQSLHWFLRIQIIFEVACGLAFLHATKPEPIVHRDLKPGNILLDKNYVSKIGDVGLAKLISDIVPEGLTEYRDTAVAGTLYYMDPEYQLTGTIRPKSDVYALGIVILQLLTGKRPHGLILSAEEAIRKGSISDFLDRSQIDWPIAEAEILAKLAVQCTALKCRDRPSLESEVLPELENILSRVTASPTLRSPNAAVPTHFICPILQEVMDDPYVAADGHTYEHRAIKAWLKKHKTSPVTKQRLPYLSIIPNHSLRVAIQQWKSQFLL
Length793
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-0.207
Instability index49.37
Isoelectric point8.23
Molecular weight87071.56
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03320
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.24|      13|      33|      16|      28|       1
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   16-   28 (20.19/11.88)	AAASAAEAAASSA
   51-   63 (22.05/13.68)	AAANLAPGAARVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.16|      50|     228|     455|     514|       2
---------------------------------------------------------------------------
  455-  514 (71.93/72.79)	RCTlDHTEVAVKVLQQdssdkIDEFLREVEILSQLHHPNLLLLLGF.CPeigcLVYEYMEN
  687-  737 (80.23/52.69)	KCR.DRPSLESEVLPE.....LENILSRVTASPTLRSPNAAVPTHFiCP....ILQEVMDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.76|      12|      37|     368|     379|       3
---------------------------------------------------------------------------
  368-  379 (21.57/13.43)	VAD....EKTKHLEAI
  402-  417 (15.19/ 7.37)	VADmvtvEKTKVMDAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.72|      24|      37|     190|     213|       4
---------------------------------------------------------------------------
  190-  213 (42.78/21.97)	NQSRTG..KSSSCVRTQSISHRSFSR
  227-  252 (38.94/19.46)	DQPEDGtlKSSGDASSDAGSHTCSSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.18|      29|     131|     156|     184|       6
---------------------------------------------------------------------------
  156-  184 (51.67/34.61)	ILRLRDVPSTVLKAMPCSCNVFVVS..RHKL
  289-  319 (43.51/28.03)	IGRLKEVPYVALSSIDESQPVDEVAklRKEL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03320 with Med32 domain of Kingdom Viridiplantae
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