<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03316

Description Uncharacterized protein
SequenceMEIEGAAGGGEVLEMEAPSVSTVAIAVNGSKTSKHAVKWALDKFVPEGRVLFRILHVRPTIKMVPTPMGNFIPITQVREDVATAYKKEVEWQANNMLLPYKKMCAHRKVEAEAVLLESDDVATAISEEISKFNVCKLVLGSSSSIFRRKLKGSKTASKICECIPSFCTAYVVSKGKLSSVHSATSDNVDTPDSISSSTVSSPSSRSFSSSAPSEWGDTYGSANMSFNQPSLSFQRDQALANTKKLSNRTASPSGSGRSEISYHDDTVLTSSHSVNSEAQFSSSSSGNSIYKSFHRDHSFDNSDQASVSDIATNLKHSHDQDYLKLEIERLRVKLRHLQKLNELAQSESFGHDQKLNKLGIQSIEDEIKLKEIELTEEKVRRLIRKKEREEQEIARREDQLKNGSAESEGKQSNVNPEGDENKTGERIFGRCFDEYNRYTWEEIQASTSSFSEDLMIGRGSYGTVYKAKFHHTVAAVKILNSPEGCGTQQLQQELEVLGKIRHPHLLLMLGACPEHGCLVYEYMENGSLDDMLQRKNNTAPLTWFDRFRIAWEVATALMFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMDQYLSTMIKNTAPVGTFCYIDPEYQRSGVVSMKSDVYALGIVILQLLTAKSPMGIAHVVETALEDGHFVDILDAAAGQWPLNETQELAVLALKCAEMRRRDRPDLSDHILPALERLKDVATKARETTLNGQTAPPSHFICPILQEVMIDPYVASDGYTYDRKAIELWLSMNDKSPMTNLRLPHKSLIPNHSLRSAIMDWRSSKS
Length804
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-0.418
Instability index46.31
Isoelectric point6.30
Molecular weight89563.45
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03316
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.52|      12|      24|     192|     203|       1
---------------------------------------------------------------------------
  192-  203 (20.41/11.09)	DSISSSTVS..SPS
  217-  230 (18.11/ 9.04)	DTYGSANMSfnQPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.92|      28|      32|     232|     263|       2
---------------------------------------------------------------------------
  232-  260 (43.43/24.84)	SFQRDQALANTKKLSNRTA.SPSGSGRSeI
  265-  289 (27.98/18.84)	....DTVLTSSHSVNSEAQfSSSSSGNS.I
  292-  308 (24.51/ 6.63)	SFHRDHSFDNSDQ.....A.SVS.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.00|      31|      32|     311|     342|       3
---------------------------------------------------------------------------
  311-  342 (47.95/40.48)	ATNLKHSHDQDYLKLEIERL..RVKLRHLQkLNE
  344-  376 (46.05/33.46)	AQSESFGHDQKLNKLGIQSIedEIKLKEIE.LTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     240.17|      71|     120|     606|     679|       4
---------------------------------------------------------------------------
  606-  679 (118.05/85.65)	TMIKNTAPVGTF.CYIDPEYQRSGVVSMKSDVYALGIVILQL.LTAKSPMGIAHVVETALEDGHfvdILDAAAGQW
  727-  799 (122.12/80.62)	TLNGQTAPPSHFiCPILQEVMIDPYVASDGYTYDRKAIELWLsMNDKSPMTNLRLPHKSLIPNH...SLRSAIMDW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.16|      27|     379|     135|     188|       5
---------------------------------------------------------------------------
  140-  167 (44.58/68.63)	GSSSSIFRRKLKGSKTASKICECiPSFC
  459-  485 (48.57/16.32)	GSYGTVYKAKFHHTVAAVKILNS.PEGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.51|      11|      39|      79|      89|       6
---------------------------------------------------------------------------
   79-   89 (18.94/12.81)	EDVATAYKKEV
  119-  129 (18.57/12.43)	DDVATAISEEI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03316 with Med32 domain of Kingdom Viridiplantae
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