<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03310

Description Uncharacterized protein
SequenceMDGKDFLVEIGMKEEDITTMLFGKKVIELTEDAFDSSKEERKIFEELFCRTGISRVSTHHPRRDGKNNSLEDTSKEFISYTPSSSASNDKLVRCRVVESFTYGNLSSYLVFRNNVNHHMQKTVSFPDVATTSSDLAIQWTPPSIERVYTRRTRARRMQRARLCSVLDLERVDITGTERRRDRGQHKYEYGHGELWNHLRLHANLLMMDAGWKIDGKERGDKSKVDHVYESPDKLMRLFSLPRAWKCFGQWLLINSSSFVGNDYGRVWFNIHDFLIDLKNTLLCIEYEVRLPKQSLSFLNQWQLLDPFMAVVCIDKKVKALKKGVALKAVNSTVTFVSRTDSKLLTSRSADNTLALNHSNNYNNMHPRSRKNLLPLLQSDDPMGNSSCSKQHSMIGKSKSNQYKMDQRLLSIAEINEKSIRSTAHRIVMGLQGSTAFPSSRTTCLKMKNKLPHSLTQCIQDKSDPLYFPPNYYPDDLVDNVEIKDPSFHAYDMIESANVDNSADSPSDGLLLGANLLFSHEVDEMLLGQLDDTSNEHHGAPAVSELQAELVDLGDGPSGPSSLPSEKDIGLKANKDDIDNEQHNAAAVLESQSANKDVSDGPAGALSFLPTKDTVLEANEMSSEEMTKIGQLSCEATDNAMVISEPQLLFVSPQDGTLSFMNDSMCSQEMQSCVRASSDTMGTNFQLDIHSSVYEASLIQGFLYLDNEGSPICWTVINPESPRQLICSEPISKASELHGEMNMEGGTLTSEPMQMSKLASRKTNRKRSKKSASIEDKGNQKKHKVNDIHASDCTIDQHMNHITANPAGYLISNEKEQIGSASTEHVSLNLLPENSTGKNQGSEQQVPIKTSDNDQARVSIELTEKIMPEKTPKKDVRREKAPRHKCKFDDNDLLITAVIHKLTARYRNRFSRRLAKKSGFRRLPRCRRESEERGDMSTFPKGARTVLGKLLEMGIVCRVNILQYRRPGSKNVLKDGNITNKGIRCRCCDVVFTMSRFKCHAGLQQEIPSLNLFLGSGKSYTLCQLQAWSIEHKARKERAKYTMPLQADQNDDTCGLCGDGGELICCDNCPASYHLDCLPCQDIPDGTWYCYRCLCNIYTNLRSRVGIPNHIGDGFSCTILRNNGDQRVSKAADIAILAECNMKLVIALSIMEECFLPVIDARTGIDIIPPILYNWRSDFVHLDYKGFYTVVLENDDSIISVASIRLHGTIVAEMPLVATSLENRQQGMCRRLMDYVEEMLKSLKVQMLLLSAIPSLVDTWTSAFGFVPINDRDKQQLSKLRLVSVPGTVLLKRNLCVCSGTDPVGGGGDSKENLIRDDQPVAIAEDRRVGTPLGETKLQQQPSDDFSSPVCPVDSLADDLGSLQITSPCEIIPRRLSKNTVNSANVSAACKIQGLERLQVPSIEKAACKSYLRPGLSVKAKNCDTDRAHTYGTNSSYNVNIMDSVPRSRNPSKESMHQPTESGTMENNSSYLPTGTKSCSSTYLNNHMVQADTITTTNHSNLARTGTKLFSTAPFVHDMCDDGNLDAMDDDELMASIDLDRVVMEHFQATNTPRGSSRTPLGNCKSGGFDESNLPQDLSVVCDHGNKLALCPEVKSHLHEMKDNLLAVSNELIEGKLSPQRTDELHQKRSVLKKQIELLGEYMARLTQDEERQRSHSMASTTALQSHHPIVTPSISFVQDTNRFQSPIYIRNEPGNNGLCFSSAPYSYMDGLSTPLPSVQRDYTPKIIDISYTEGSSDKKWSSTHFAWTKDLEANNKKVFGNRSFRPNQREIINATMSGNDVFVLMPTGGGKSLTYQLPALISNGVTLVVSPLVSLIQDQIMHLLQANISATYLSATLEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDVLFRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPETPVLALTATATASVREDVVQVLGLANCVIFRQSFNRPNLRRVQSINKSAYVEFVWPEYGHKASHYHGSLDPIDRSYIQEQWSNDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQLSSCVLYYNYSDYVSYCENDVDCRRLLQLIHFGEMFDPSCCAKTCDNCLKELRWIEKDVTNIARQLVDLVMMTKQAYSASHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLGKGEAARILRHLVTEGILIEDVKKSENMYGSVSSVLKICVPLRFFVEQAHQKQVNDLFSGKHNVVLKFPTPEKAPKMGVLDESSVPQINRTTQQQSQVDESLSSELFEALKCLRTQLMKENQCLAYHIFRNETLREISCRIPRTKEELVEINGISKNKLVKYGDRVLATIEDFLIKYPTKKSSSSGGSNEQTEAVKKRRGFTGTDTSSNCDDFEERTVQSKKRAAKTRSRQEISDAASVVQDVRYYDLELDGYDHADDVVPFSVQKPVASGRVLPKWQSAKIA
Length2444
PositionUnknown
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-0.472
Instability index48.48
Isoelectric point6.86
Molecular weight274095.88
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
metal ion binding	GO:0046872	IEA:UniProtKB-KW
N-acetyltransferase activity	GO:0008080	IEA:InterPro
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03310
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.56|      11|     145|    1669|    1679|       1
---------------------------------------------------------------------------
 1669- 1679 (19.83/11.13)	IVTPSISFVQD
 1808- 1818 (18.73/10.11)	VVSPLVSLIQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.91|      26|     145|     705|     769|       2
---------------------------------------------------------------------------
  716-  741 (47.40/30.43)	INPESPRQLICSEPISKASELHGEMN
 1964- 1989 (48.51/13.08)	INKSAYVEFVWPEYGHKASHYHGSLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.08|      38|      76|    1767|    1804|       3
---------------------------------------------------------------------------
 1767- 1804 (67.81/53.12)	NQREIINATMSGNDVFVLM...PTGGGKS..LTYQLPALISNG
 1841- 1883 (57.27/43.41)	EQQEILRELMSPTCTYKLLyvtPEKIAKSdvLFRQLENLYSRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.70|      28|      76|     589|     617|       4
---------------------------------------------------------------------------
  544-  572 (46.16/22.49)	ELQAELVDLGDGPSGP.SSLPSeKDIGLKA
  589-  617 (45.54/25.87)	ESQSANKDVSDGPAGAlSFLPT.KDTVLEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.49|      27|      72|     353|     392|       7
---------------------------------------------------------------------------
  353-  392 (37.96/37.80)	LALNHSNNYnnmhPRSR......KNLLP..LLQsddpmgnssCSKQHS
  428-  462 (39.53/16.03)	MGLQGSTAF....PSSRttclkmKNKLPhsLTQ.........CIQDKS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03310 with Med34 domain of Kingdom Viridiplantae
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