<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03308

Description Uncharacterized protein
SequenceMAARHQWMADEEPGFRGKMIRDMTTKCMAIIDSQQENHYRGFHIHSVRFEEEAFTNTTNKVDYMDHISRKFVDLEARIRHQAWIVPSARRPSSQQQNVHNTQQNSGQMPDQAETMAAPCPLNCNTVAVGPVATCVQPSHRSMQPQSPHQQQAKQLHPTKIAGYNPTFLDQQPQEQSVVGENLKLNHLLGQSASATGTQLRQLAEKQRQSQLMRMNKQYMRGSQQQNCTQRNQILGVQQANVAKMQIGHPGVQNNRQNVRKECQPMTPPQQRIGVAQQSSFVCQSPQTSGAIISPGEVDWREEIFQKITSLKEAYLSEVKEFDKMVRVPNLTKEQIRALPMEKARGYRRALVLKQLIKSMLDFMQIPESKMHKSFHGLFPRFLNNLEKLRRFKIETRNAETNTENQSQNCREQPQIVNLIANASPLTCDASRQQKQQEQLMDAKTSKMEQAIITRTPTAHQENNGYYLLGLSSPCFSPGDMQPLSATTLKECFTPSPLTKPRGAVQVASPHVTASSALVKSSIAKPGIVQVVSPCTSVKSRLSSPTGRSEVARVASPSTSDKSTLPSISNPRTVQAALPCPIAKPGTAQAALPCAPVKSTSQSPLARPGAVRVDSPRASVTLNLRSTVDMPQTAQAASPCASVNSMVSLDTDHQAEDQVPHGPEIVDSKNPISRLVQLVRSSSPEVLRSSVNAMRLAIWEADRIPEPPLPYQSRNGRMKRVFDNETSPLCNTDESDMTSECGEFGDESSVGTSKRRKTVVNANDALVNEIKAINSKLIDTVISIADENGTDGIISWNRGGTLIKLSYSAVSLAPNLKSLFAAPEMSIVMPVKLLVPADYPRSPPMFVDNDRDDEEMRKLSDISHAVVATFRQILCDLPEPRSIEVMAGAWDGCVRRAVVELAHRHGGGTFSSRCSQWESSKVQGHTMDK
Length928
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.04
Grand average of hydropathy-0.548
Instability index59.90
Isoelectric point9.08
Molecular weight102690.51
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03308
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     325.71|      58|      58|     472|     529|       1
---------------------------------------------------------------------------
  472-  529 (101.93/56.53)	SPCFSPGDMQ.PLSATTLKECFTP..SPLTKPRG...AVQVASPHVTASSALVKSSIAKPGIVQ
  532-  574 (55.89/27.57)	SPCTS...................vkSRLSSPTGrseVARVASPSTSDKSTL..PSISNPRTVQ
  579-  634 (87.21/47.27)	CPIAKPGTAQaALPCAPVKST.SQ..SPLARP.G...AVRVDSPRASVTLNL.RSTVDMPQTAQ
  637-  687 (80.67/43.16)	SPCASVNSMV.SLDTDHQAEDQVP..H...GPE....IVDSKNP.ISRLVQLVRSS..SPEVLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.90|      24|      45|     185|     208|       2
---------------------------------------------------------------------------
  185-  208 (39.63/23.01)	NHLLG.QSASATGTQL.RQLAEKQRQ
  231-  256 (32.27/17.45)	NQILGvQQANVAKMQIgHPGVQNNRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.75|      32|     126|     134|     169|       3
---------------------------------------------------------------------------
   86-  122 (47.46/21.50)	PSARrpSSQQQNVHntQQNSGQM.PDQAETMaAPCPLN
  137-  169 (57.29/29.92)	PSHR..SMQPQSPH..QQQAKQLhPTKIAGY.NPTFLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.92|      19|      21|     397|     415|       5
---------------------------------------------------------------------------
  397-  415 (33.62/21.46)	NAETNTENQSQNCREQPQI
  421-  439 (31.30/19.41)	NASPLTCDASRQQKQQEQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.00|      12|      19|     752|     763|       6
---------------------------------------------------------------------------
  752-  763 (19.99/13.95)	SKRRKTVVNAND
  774-  785 (19.01/12.92)	SKLIDTVISIAD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03308 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALPCAPVKSTSQSPLARPGAVRVDSPRASVTLNLRSTVDMPQTAQAASPCASVNSMVSLDTDHQAEDQVPHGPEIVDSKNPISR
2) ATCVQPSHRSMQPQSPHQQQAKQLHPTKIAGYNPTFLDQQPQEQSVVGENLKLNHLLGQSASATGTQLRQLAEKQRQSQLMRMNKQYMRGSQQQNC
3) AWIVPSARRPSSQQQNVHNTQQNSGQMPDQAETMAAPC
4) KSRLSSPTGRSEVARVASPSTSDKSTLPSISNP
5) RVFDNETSPLCNTDESDMTSECGEFGDESSVGTSKRRKT
590
132
82
538
719
673
227
119
570
757










Molecular Recognition Features






MoRF SequenceStartStop




NANANA