<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03307

Description Uncharacterized protein
SequenceMSGFNRMGSDGNFGRGPRELTGAVDLISRYQLLNHHSFFCKKPLPLAISDTNYLHNVVGDTEIRKGEGMELDQLFQDAYLREKTSYIQPFDMETLGQAFQLRETAPVDLSSAEKGTPTISGKPKIKSKDKVKKHKRHKEKDKDKYKDQKKHKHRHKDRSKDKDKDKEKEKEKEKEKKKDKSVHHDLGGDRSKKHHEKKRKHEGVEDLASGGHNHKKATSNGNFTKLATSKMIVVSMDNVQQFW
Length243
PositionHead
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-1.330
Instability index25.20
Isoelectric point9.66
Molecular weight28002.38
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03307
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.86|      14|      15|     133|     147|       1
---------------------------------------------------------------------------
  123-  140 (20.39/ 8.09)	PKIKSKdkvkKHKRHKEK
  187-  200 (22.48/ 7.86)	GGDRSK....KHHEKKRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.15|      20|      20|     142|     161|       2
---------------------------------------------------------------------------
  142-  161 (36.90/13.66)	KDKYKDQKKHKHRHKDRSKD
  164-  183 (33.24/11.75)	KDKEKEKEKEKEKKKDKSVH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.56|      15|      20|      74|      92|       3
---------------------------------------------------------------------------
   74-   92 (22.99/28.25)	LFQDAYLREKTsyiqPFDM
   95-  109 (26.57/19.03)	LGQAFQLRETA....PVDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03307 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRETAPVDLSSAEKGTPTISGKPKIKSKDKVKKHKRHKEKDKDKYKDQKKHKHRHKDRSKDKDKDKEKEKEKEKEKKKDKSVHHDLGGDRSKKHHEKKRKHEGVEDLASGGHNHKKATSNGNFTKLATSKMIVVSMDNVQQ
101
241










Molecular Recognition Features






MoRF SequenceStartStop




1) HKRHKEKDKDKYKDQKKHKHRHKDRSK
2) KDKEKEKEKEKEKKKDKSVHHDLG
3) KHEGVED
134
164
200
160
187
206