<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03302

Description Uncharacterized protein
SequenceMAAPPSLEYWRGFFSGARAGIFDAIDAAIRVAAADHPDALRARRDAIAERLYTALAVLPPPSQAPPPKEVAPPRPDQQLFLPAAEAFRVKAALSDAQEKSEAELLELLRSLQKLEFTVDTIRVTEIGTAIRPLRKHSSKQIRQLVRSLIDGWKAVVNDWVNNGGAIVENTDNTPQSMDGSCLEQEGGLPSPPMDEAALFATPYIRTNAEECAQQQYPTNQEPAKKPLPMGQGYDPEQNWKLDQSAMRQSQPYEPFDWQMKQQSITQSQRKPSAAPHGPWTPQKMHLEPKCSEMRPKKQQDTSVAQRRPKPTMPNQLQSKVDQNSVQVNAKLEATKRMLQEGYQEFNNAKKQRTIQVVDPQDLPKQRNRNLQPSGKPRNNSNTSLRTLQLRTMNQAK
Length396
PositionUnknown
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-0.847
Instability index60.65
Isoelectric point9.35
Molecular weight44477.83
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03302
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.14|      28|      31|     325|     355|       1
---------------------------------------------------------------------------
  238-  264 (40.21/18.69)	NWKLDQSA..mRQSQP.YEPFDWQMKQ.QSI.
  328-  355 (48.18/32.07)	NAKLEATK...RMLQEGYQEFNNAKKQ.RTIQ
  361-  388 (25.75/10.92)	....DLPKqrnRNLQPSGKPRNNSNTSlRTLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.35|      11|      34|     268|     283|       4
---------------------------------------------------------------------------
  268-  283 (17.56/18.89)	QRKPSaaphgPWTPQK
  305-  315 (22.79/10.29)	QRRPK.....PTMPNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.11|      20|      34|      92|     111|       5
---------------------------------------------------------------------------
   92-  111 (29.63/21.02)	ALSDAQEKSEAELLELLRSL
  129-  148 (32.48/23.77)	AIRPLRKHSSKQIRQLVRSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03302 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EECAQQQYPTNQEPAKKPLPMGQGYDPEQNWKLDQSAMRQSQPYEPFDWQMKQQSITQSQRKPSAAPHGPWTPQKMHLEPKCSEMRPKKQQDTSVAQRRPKPTMPNQLQSKVDQNSVQVNAKLEATKRMLQEGYQEFNNAKKQRTIQVVDPQDLPKQRNRNLQPSGKPRNNSNTSLRTLQLRTMNQAK
2) GGAIVENTDNTPQSMDGSCLEQEGGLPSPPMDEAALFATP
209
163
396
202










Molecular Recognition Features






MoRF SequenceStartStop




1) RLYTALAV
2) SLEYWRGFF
50
6
57
14