<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03296

Description Uncharacterized protein
SequenceMAPAFTVGLAVTASKSSTYALQWALSRFTNTTDAAPIFLLIHVLTKLFAVPTPMGNYIPIDRVRNDVADAYFQDVQDKAQKMLLLYKNMCHQNKVEAQVLLVKGNDVSETISCVVAEYRINILIVGITTKSAFTRNPFGNRTSSKICKSVPSFCTAFLVSKDGLSSVYSSALEADSASSIPTSNHVSSKSDALSDAMSSSSVNFNGSSDQNPFDSPRRLGSDLPSEDPKYGVPARRIRSLTLYDYLSGSPSTYPDKDGRLTSSTGSESSKSSELRQESSLQGLMLSEHKDDISTELESLRLELRLIQGKHKRVQDESDDASRQASSMAELAAKRLEEETQLREIQSRLDKANGNVEEQRANRHAAEQALNHVHDLVRGEIMQKNMLQVKASRDADKKLRLEKLFVLNGNSYSTFTWEEINNATTSFANYLKIGSGANGTVYKGYLNHSTVAIKVLHSDDNSSNKHFRQELEVLGKIRHPHLLVLLGACVEKGCLVYEYMENGSLEDRLRCKNGTAPLAWCDRLRIAWEVASALVFLHSTKPSPIIHRDLKPENILLDGNLVSKVGDVGLSTLVPRKEESMATSSRSSSSSSTMYKKTALAGTLFYIDPEYQRTGQVSVKSDTYALGMVMLQLLTARAPIGLAEVVERAVEEGRLREVLDESGGKWPMKEAQELAQLGLSCLEMRGKDRPDLKNRVTVDLERLKHTKPEPPTHFLCPILKRVMQEPCIAADGYSYERDAIQMWLCDKDVSPVTKARLPNKTLVPNRSLLSAITTCRSQGGRKPPNKYTPPD
Length790
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-0.406
Instability index45.22
Isoelectric point8.47
Molecular weight87478.40
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03296
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     435.42|     149|     163|     384|     546|       1
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  384-  546 (224.08/191.73)	NMLQVKASRDAD..KK...LRLEKLFVLNGNSYSTFTweeiNNATTSFANYLKigSGANGTVY...KGYLNHSTVAIKvlhSDDNSSNKHFrqeLEVLGKiRHP.HLLVLLGACVEKGCLvYEYMENGSLEDRLRCKNGTAPLA.WC......DRLRIAWEVASALVFLHSTKPSPIIH
  548-  712 (211.35/142.68)	DLKPENILLDGNlvSKvgdVGLSTLVPRKEESMATSS....RSSSSSSTMYKK..TALAGTLFyidPEYQRTGQVSVK...SDTYALGMVM...LQLLTA.RAPiGLAEVVERAVEEGRL.REVLDESGGKWPMKEAQELAQLGlSClemrgkDRPDLKNRVTVDLERLKHTKPEPPTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.18|      23|      41|     206|     229|       2
---------------------------------------------------------------------------
  206-  229 (39.25/26.65)	GSSDQNPfDSPRRLGSDLPSEDPK
  248-  270 (41.93/23.66)	GSPSTYP.DKDGRLTSSTGSESSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.26|      35|      36|     296|     331|       3
---------------------------------------------------------------------------
  275-  321 (45.32/32.35)	RQESSLQGLMlsehkddisteLESlRLELRLIQGKHKRV......QDESDDAS
  322-  365 (45.93/28.29)	RQASSMAELA........akrLEE.ETQLREIQSRLDKAngnveeQRANRHAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.21|      21|      34|     104|     124|       4
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  104-  124 (34.97/25.98)	GNDVSETISCVVAEYRINILI
  139-  159 (37.24/28.18)	GNRTSSKICKSVPSFCTAFLV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03296 with Med32 domain of Kingdom Viridiplantae
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