<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03294

Description Uncharacterized protein
SequenceMEAMWSARCSVSSPTSSLLDAGDELEEKRTTADEEKVFVAVKDDVEHGRSTFLWALQNLATDGSKIVVVHVHTPAQAINKIHCTSMKPEEISDYLRLVREKAARNLDEYALIAKSTGKDLEIDCDKIIIDMDDVAKGLEELITLHGITKLVMGAAEDQHYTEEMRKPNSKIAIKLMETASPSCKIWFTCNGHLICTREPNDNLLAIYLPPAQSNTTPLSVCSISSQMSSTELNEAPRSLFESALSDWELFFGGWGRIGYGPFRTDEAISVPAATTQPMIIDGANKQRSVMHSPHSDSVNFLLPDRYPVRPLMLNHLEKRLLDAKYFLGTDGIQEEEKPNLDEEMYDQHKEAWTRVELLKKEADNESNRRRKAEMDLLTALQRVKESEKLYLHEVNQRKEIEKTLARQRLEIDEMKRRHRTLYDELHDTKKQKLVLEQRITQIKSAAKDYVQEITEYFIQESCEESKKRQKIKMDLVAVLQRVKDVENLNQSEKMQRKDMEEKIVRQRMDIEETKRQRDELYHELKDVKEQKLSLERANASEETNRRIKAETEMVSALLRAENLEHRYLHELKRREAVEETLARQKKEIQETKRELDDIHGRHMADIKSTFKVYEEKLAESRYFIQELQANYDKLLHERDTALAESEELRQKNKHRARMTAATQTCSFSLFELQQATQDYDTALKIGTGRFGSVYKGFLRNTTVAVKLLHPQSLKGQSEFHREVVFLSRMRHPNVMTLLGACPEGFGLVYEFLPNGSLEDQLTRKKDMPPLTWQMRTRIIGEVCSALTFIHSHKPHPVVHGNLNPTNILLDINFISKLHISQLPKKHSTRNNTSGTSSYLDPEYLSTGELTPCSDVYSFGIIILHLLTGKSPENITTIVENAMEKRHLHSIMDASAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIEPLLKATSQNYGCRQTFAMPDDTPSYFICPILQEVMTDPHIAADGYTYEADAIREWLNGGNARSPMTNLRLEHHELTPNRVLRSAILEWQQQKQHRR
Length1029
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-0.619
Instability index47.82
Isoelectric point6.26
Molecular weight118270.17
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03294
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      77.24|      12|      27|     365|     376|       1
---------------------------------------------------------------------------
  365-  376 (21.02/ 9.94)	ESNRRRKAEMDL
  393-  404 (17.15/ 6.97)	EVNQRKEIEKTL
  413-  424 (19.08/ 8.44)	EMKRRHRTLYDE
  464-  475 (19.99/ 9.15)	ESKKRQKIKMDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      96.37|      18|      72|     633|     650|       2
---------------------------------------------------------------------------
  531-  545 (22.00/ 9.41)	KLSLE..RANA...SEETNR
  548-  565 (24.11/10.93)	KAETE..MVSALLRAENLEH
  566-  584 (20.35/ 8.23)	RYLHElkRREAVEETLA.RQ
  633-  650 (29.90/15.09)	KLLHE..RDTALAESEELRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.72|      24|     163|     425|     460|       3
---------------------------------------------------------------------------
  437-  460 (42.24/51.22)	QRITQIKSAAKDYVQEITE..YFIQE
  601-  626 (38.47/19.85)	RHMADIKSTFKVYEEKLAEsrYFIQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.30|      29|      48|     218|     246|       4
---------------------------------------------------------------------------
  218-  246 (47.34/34.48)	LSVCSISSQMSSTELNEAPRSLFESALSD
  268-  296 (50.96/37.70)	ISVPAATTQPMIIDGANKQRSVMHSPHSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.52|      41|     563|     160|     210|       5
---------------------------------------------------------------------------
  160-  210 (66.32/60.74)	YTEEMRKPNskiaIKLMETASP...SCKIWFTCNGHLictrepNDNLL.AIYLPP
  725-  769 (67.19/39.83)	FLSRMRHPN....VMTLLGACPegfGLVYEFLPNGSL......EDQLTrKKDMPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.12|      18|     162|     318|     359|       6
---------------------------------------------------------------------------
   18-   35 (31.09/ 8.36)	LLDA....GDE..LEEKRTTADEE
  320-  343 (22.03/50.13)	LLDAkyflGTDgiQEEEKPNLDEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03294 with Med32 domain of Kingdom Viridiplantae
Unable to open file!