<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03293

Description Uncharacterized protein
SequenceMEILGRGGGVHRRWDTSGSGSQYSFRTSVSSVAEISSEVEEASPLAPAVDDKVFVAVPADVKYGKSTLQWALQNLTKDGGKVVITHVHCPAQMIPMMGAKVHYTKMNPKQVDDYRNKEREKVEEKLDEYLLMCRKLKVSCEKLIIEKEDIAKGLEDLIALNGVTKLVMGAAADKHYSRKMNTPKSKTALKILEAADPSCKMWFACKGHLICTREANTTVPAIPPSPAYTIASTLSTSSISSRIRSMNPSESEASSSSGSPIHDLNRSRTEVARYPSQGSGTAPPQLSEHSDQNVNGRPTRTAIDSIDSWDEFGSSQTSWYHSSRNSDTVRLSGSAMQQPMYEPDDDHFAPPHELENSGGDADIYRRLQEALREAQDLKKETYEESTKRRNAERNLFSALQKVKELENLYQKEIMQRKITEDTLEKQIQETEETKRECSMIYNNLHDVEEQKLVMEHHITEMQTVLKEHEEKLAESKHLFQVLQADKDKLQQELDAAVSEAQNLRQKNKQRISMPGEELNTEFSSFELEQATRSFAEELKIGEGGFGSVYKGTLRNTTVAIKLLHPHSMQGQSEFDQEIAVLSRVRHPNLVTLIGSCRESFGLVYEFLPKGSLEDRLACLNNTPPLTWQVRTKIIYEMCSALTFLHSNKPHPIVHGDLKPANILLDANLVSKLGDFGICRLLIQSNTNTAFATTRLYRTTTPKGTFAYMDPEFLTSGEITPRSDVYSLGIIILRLLTGKPPQKIAEVVEDAIESGELHSILDPSAGSWPFVQANQLAHLGLRCAEMSRRRRPDLTGDVWKVVEPLMKAASLTAVRPSFVVRPDDDAPPPSYFVCPIFQEEMNDPHIAADGFTYEAEAIKGWLDSGHDTSPMTNLRLEHRELIPNRALRSAILEWQQQRQQHRQQEDDCT
Length908
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-0.560
Instability index51.92
Isoelectric point5.84
Molecular weight101991.07
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03293
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     129.35|      22|      22|     254|     275|       1
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  232-  252 (21.54/10.33)	...............STLSTS.SISS........RIRSMNPSESE
  253-  274 (33.93/20.98)	A..............SSSSGS.PIHD........LNRSRTEVARY
  275-  297 (28.26/16.11)	P..............SQGSGTaPPQL........SEHSDQNVNGR
  298-  341 (19.01/ 8.15)	PtrtaidsidswdefGSSQTS.WYHSsrnsdtvrLSGSAMQQPMY
  344-  364 (26.61/14.69)	...............DDDHFA.PPHE........LENSGGDADIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.06|      18|      22|     474|     494|       2
---------------------------------------------------------------------------
  474-  494 (24.12/26.71)	ESKHLFQvlqADKDKLQ...QELD
  499-  519 (23.95/16.30)	EAQNLRQ...KNKQRISmpgEELN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.85|      10|      22|     164|     173|       3
---------------------------------------------------------------------------
  164-  173 (16.96/11.68)	TKLVMGAAAD
  187-  196 (15.89/10.50)	TALKILEAAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     242.28|      83|     340|      34|     126|       4
---------------------------------------------------------------------------
   34-  126 (121.01/109.23)	EISSEVEEASPLAPAVDDKVFVAVPaDVK.....YGKSTLQwalQNLTKDGGKVVI.....THVHCpaqmiPMMGAKVHYTKmNPKQVDDYRNKEREKV....EEKL
  376-  472 (121.26/80.22)	DLKKETYEESTKRRNAERNLFSALQ.KVKelenlYQKEIMQ...RKITEDTLEKQIqeteeTKREC.....SMIYNNLHDVE.EQKLVMEHHITEMQTVlkehEEKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03293 with Med32 domain of Kingdom Viridiplantae
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