<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03284

Description Uncharacterized protein
SequenceMASNMQPSGPPQQSRPPMMGSSAPPQNLGPPMPMQFRPVIPQQQPPQFMQQGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAGSMAYQPARPMSSGPLQLPATFPGGHMPTMGGPIPPPSYTASAFIFLTFYQPSSIPPPIVQPWGTAPGQNVPPVTPLVQPGHQPFTNEQNNSSELSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTSEGRKYYYNKVTKQSKWTIPDELKIARELAEKASNPRHDQETETTTGAPTGPNSVEPSSVSVIQSSTTSVVSSSTLDAAPNAAPSGAGPLENKENTSSSINTAMQNGGPTTIAAPVISTEVPLVASDTGTNRANNDYSSLASTADTQNGASAEDLEEAKRTMAVSGKINVTPVEDKASEEEPVIYANKLEAKNAFKALLESSNVESDWSWDQAMRVIINDKRYGALKTLGERKQAFNEYLNQRKKLEAEERRIKQRKARDDFIAMLEECKELTSSTRWSKAITMFEDDDRFSAVERGREREDLFENYLMELQKKERARAAEEHKKHIADYRAFLESCEFIKANTQWRKVQERLEDDERCFRLEKIDRLEIFQEYIRDLEKEEEEQKRIQKEQVRRQERKNRDEFRKMLEEHVAEGMLTAKTRWRDYCAQVKDSHVYMAVAANSSGSMPKELFEDVMEELEKQYQDDKARIKEVVKSGKIPMTTSWTLEDFQTAVMEDDTFKGITHTNMKLIYDDQVERLREKEVKEAKKRQRLGENFSDYLYSIKEISASSTWDDSKALFEDSQEYKALDSETYARELFEECVVRLKERLKEKERLREEEKAKKEKEREEKERRKEKERKEKERKEKERDKEKEREKDKGKDRSRRDEIDFDAVDADGHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGARDDLEDGELGEDGEIH
Length995
PositionUnknown
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-1.197
Instability index53.29
Isoelectric point6.12
Molecular weight114103.50
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03284
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     183.58|      22|      22|     833|     854|       1
---------------------------------------------------------------------------
  833-  854 (32.74/15.08)	EKERLREEEKAKKEKEREEKER
  857-  870 (22.67/ 8.05)	EKER........KEKERKEKER
  871-  892 (28.13/11.86)	DKEKEREKDKGKDRSRRDEIDF
  897-  918 (27.30/11.28)	ADGHGSKDKKREKDKEKKHKRR
  919-  940 (26.13/10.47)	HHDTADDVSSERDEKDDSKKSR
  945-  965 (26.66/10.83)	DRKKSRKHTHA.SDSDSENRHK
  970-  987 (19.94/ 6.15)	DRDSSR.RNGARDDLEDGE...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.66|      34|      38|     190|     223|       2
---------------------------------------------------------------------------
  190-  223 (67.41/40.63)	L....SSSDWQEHTSADGKKYYYNKKTRQSSWEKPAEL
  227-  264 (61.26/36.25)	LeradASTEWKEFTTSEGRKYYYNKVTKQSKWTIPDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     485.53|      65|      65|     502|     566|       3
---------------------------------------------------------------------------
  396-  434 (35.00/16.90)	..........LEE.AKR...TMAVSGKINVT.....PVED...........KASEEEPVI..YANKLEAK...N..........
  436-  495 (75.33/45.29)	.FKAL.....L.E.SSN..VESDWSWDQAMR.....VIINDKRYGAL...KTLGERKQAFNEYLNQ.RKK.....LEAEERRIK
  502-  566 (108.49/68.64)	DFIAM.....LEE.CKE..LTSSTRWSKAIT.....MFEDDDRFSAV...ERGREREDLFENYLMELQKK...ERARAAEEHKK
  570-  628 (84.83/51.98)	DYRAF.....LES.CEF..IKANTQWRKVQE.....RLEDDERCFRL...EK.IDRLEIFQEYIRDLEKE...E.....EEQKR
  644-  717 (73.78/44.20)	EFRKM.....LEEhVAEgmLTAKTRWRDYCA.....QVKDSHVYMAVaanSSGSMPKELFEDVMEELEKQyqdDKARIKEVVKS
  718-  780 (57.25/32.56)	GKIPMttswtLED.FQT..AVMEDDTFKGIThtnmkLIYDDQ....V...ERLREKE......VKE..AK...KRQRLGENFSD
  781-  829 (50.85/28.06)	....Y.....LYS.IKE..ISASSTWDDSKA.....LFEDSQEYKAL...DSETYARELFEECVVRLKE...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     211.80|      25|      25|      78|     102|       4
---------------------------------------------------------------------------
    6-   22 (29.53/12.57)	Q...........P.........SG...PPQQ...SRPP.....MMGSS
   23-   45 (32.41/14.49)	A...........PPQNLgpPM.PMQ.FRPVI...P.........QQQP
   50-   74 (40.39/19.84)	Q...........QGQQF..RP.VGQ.AMPGA...NIGM.....PGQMP
   78-  102 (49.40/25.87)	Q...........PTQHL..PH.SGQ.VPPAS...QAGS.....MAYQP
  106-  147 (27.68/11.33)	MssgplqlpatfPGGHM..PTmGGP.IPPPS...YTASafiflTFYQP
  156-  179 (32.39/14.48)	Q...........PWGTA..P...GQnVPPVTplvQPG........HQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.25|      18|      24|     313|     330|       5
---------------------------------------------------------------------------
  313-  330 (32.55/19.90)	SSSTLDAAPNAAPSG.A.......GP
  338-  356 (26.79/15.04)	SSSINTAMQNGGPTTiA.......AP
  367-  391 (20.91/10.08)	SDTGTNRANNDYSSL.AstadtqnGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03284 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKIARELAEKASNPRHDQETETTTGAPTGPNSVEPSSVSVIQSSTTSVVSSSTLDAAPNAAPSGAGPLENKENTSSSINTAMQNGGPTTIAAPVISTEVPLVASDTGTNRANNDYSSLASTADTQNGASAEDLEEAKRTMAVSGKINVTPVEDKA
2) MASNMQPSGPPQQSRPPMMGSSAPPQNLGPPMPMQFRPVIPQQQPPQFMQQGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAGSMAYQPARPMSSGPLQLPATFPGGHMPTMGGPIP
3) PPIVQPWGTAPGQNVPPVTPLVQPGHQPFTNEQNNSSELSSSDWQEHT
4) RLREEEKAKKEKEREEKERRKEKERKEKERKEKERDKEKEREKDKGKDRSRRDEIDFDAVDADGHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGARDDLEDGELGEDGEIH
260
1
152
836
418
130
199
995










Molecular Recognition Features






MoRF SequenceStartStop




NANANA