<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03228

Description Mediator of RNA polymerase II transcription subunit 5
SequenceMDQLTGSGPERALRDSIKHWTKFVDRCIFKRLDTERFEEFIPLVQNQHPLPPFVIALLFLQPQPYNVITLDPRIPPYIQILTKLGYVDAPSILRVLYKFSSLHTQLKTSQNETQSASKGNNPYQGLKEKRKNPQRWNSSAWVEEFMFYHVIKIIVEGTAFRESRVVLELVQVISKWMELFTSVSSVFATDVMGELQSSQARIDMETARAAFVPLLLRLVEVPALVKAISSPHAKAIRKSLANSMAGFIQTLQPAPGFVERLEIFRTETLARLDPIDKKDQAATNAAMDELLGTTVGLDSFVIPDLLISNTRSAVYVFLNASLVGRPLVDDNVLISYLQNRYQGATQSSAIELIVASFDILANAVFRNEGGKDAHLLKSFLVNKVPLLLCLLFLREPTFDTNASEFCITEALSQVDTSVFPTASLMFDESRSNNPYTESVREEFCTACALHGLVQREHVERILGELSMSYEPSLEKYSKEKLVQDCLADAEKVQGLIRELEKMDGNVGAVCQALVEVMRQLCNNKETMSLKLLCSQLAQKPQILDILLLFEKLPSILDPLCQLLDNWRYEEDQGEYQPIYEEFGSILLLVLAFAYRYNLTAADIGITSPDSCIAKILGRAHISRDGDELTEQEKGHLSGWIHGLFADSGGLGDDLMSSCPPQDFYLLVASLFQNIVVAYTYGYLSDETLKGGIEYLVDTFLLPSLVPALRFLADYLWVEQKEQKAIIKILQLILLPSSISGEASTMLSSVRNLVAKPLEHSLRTYQRQDPKNQDIQPLLRALKDSLPLSRRTGGADHNELQSWTNSSSAGLAGALRHTVQGLVQWSMHPSVNSMPTSYTHRQLIAAQKIMGAKRTLRLLLEEVRTQSETGSANIVYDAVAAIVCAPNVTNEPPPNNQMMDASGNVPPAVQRPLTLREVLRLEAEGCNKLQKADPVLAEIVVRLYRRVEAHMAMPQNQAILEAPGIQLDLGSGAGGLGDVDAMAAVGVGADGMTVDGLDMGIGGPGSAGGLDATSDGDLFGGLDTNGMDMFGWGDSMDLSGN
Length1040
PositionTail
OrganismMetarhizium anisopliae BRIP 53293
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Clavicipitaceae> Metarhizium.
Aromaticity0.07
Grand average of hydropathy-0.051
Instability index42.09
Isoelectric point5.12
Molecular weight114801.32
Publications
PubMed=25102932

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03228
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|    1224.77|     306|     324|     369|     692|       1
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   52-  350 (333.57/223.91)	P.FVIALLFLQpQPynviTLDPRIPPYIqILTKLGYV..DapsilrvlykfsslhtqlkTSQNETQS....ASKG..NNPY..............QGLkEKRKNPQR...W.NSSAW......VEEFMFYHVIKIIVEGTAfrES..RVVLELVQVISKwMElfTSVSSVFA..TDVMGELQSSQARI....DME..TARAAFVPLLLRLVEVPALVKAIS.SP..HAKAIRKSLANSMAGFIQTLQPAPGFVERLEIfrteTLARLDP.......................IDKKDQAATNAAMDEL..LGTTVGL..DSFVIPD.LLISNTRSAVYVFLNASLVgrplvdDNVLISYLQNRY...QGATQSSAI
  385-  692 (492.64/375.40)	P.LLLCLLFLR.EP....TFDTNASEFC.ITEALSQV..D...................TSVFPTASLMFDESRS..NNPYTESVReEFCTACALHGL.VQREHVERILGE.LSMSY......EPSLEKYSKEKLVQDCLA..DA..EKVQGLIRELEK.MD..GNVGAVCQALVEVMRQLCNNKETM....SLKLLCSQLAQKPQILDILLLFEKLPSIL.DP..LCQLLDNWRYEEDQGEYQPIYEEFGSILLLVL....AFAYRYNLTAADiGITSPDSCIAKILGRAHISRDGDELTEQEKGHL..SGWIHGLFADSGGLGD.DLMSSCPPQDFYLLVASLF......QNIVVAYTYGYL...SDETLKGGI
  702- 1021 (398.55/270.74)	PsLVPALRFLA.DY....LWVEQKEQKA.IIKILQLIllP...................SSISGEASTMLSSVRNlvAKPLEHSLR.TYQRQDPKNQD.IQ..PLLRALKDsLPLSRrtggadHNELQSWTNSSSAG..LA..GAlrHTVQGLVQ..WS.MH..PSVNSMPTSYTH..RQLIAAQKIMgakrTLRLLLEEVRTQSETGSANIVYDAVAAIVcAPnvTNEPPPNNQMMDASGNVPPAVQR.....PLTL....REVLRLEAEGCN.KLQKADPVLAEIVVRLYRRVEAHMAMPQNQAILeaPGIQLDLGSGAGGLGDvDAMAAVGVGADGMTVDGLD......MGIGGPGSAGGLdatSDGDLFGGL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03228 with Med5 domain of Kingdom Fungi
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