<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03224

Description Uncharacterized protein
SequenceMVSTLRPPWVADVVCRLWGEQGSVFDLSSQLRELLSSIKPQTDELLILAQEFFLTATMSSHPDQRMLECLKMLSHAELISWVDLLGIITGFTQYQKSYCVVAICGLLESEIPHLQNVSNRCSFSHVSDCLAMTKAVIDVFIWIVEGMQRRSGIRSLTAVFSCFRVLAPVDEVADTMLLFGQINAISHHDIVSDMLHASFMILLEEQETRDNSKSSIEMFFYVKMPRVWSAMIKLGMKPDSVVKGLAYLTRDDVQRQAQVAVVLSAIQARHVIDKLWNMQEKLMTVLTRLIGSGGYAFDAFCSSYGLEGTLGDMSSKLASLNLLSESPSNVCVDRNMTFDLTFTMLTRIVYKYSNLTLDELVKDPRGGPDNTACSFYQWSSRYVKRISSHPQEVSENESLFIPPEVKAAYKERVLRLKERQLFWDPVKCNYGQLLHDMPIVGEVILDFFKDRKHIEEDISPPSEARRQMARCIKMVLEESVPDEKDEKDRWLFTRMVCRRQLDEMCECDSVIPPMTITLMAIAKRLFPPLHRRQIPDKEMLKKAWLYAQRQNWASPNVLRLIDHCNRAGAHKAWFEFYMHHMMKLRCPDVMDRAIETICACLLLEPQETLITACVLMVDFMMDKKSQVQFEVPYVIPLVKLLTQVMLMSVWIIDRECKKVEELKNSEPKTKRPKLLGDVQIHPSIKILQETVEVAINKFVKGSSQGYLCQPISSVCHIVRMIAGAPESEAKQLLIPYLKHLLFFQLARLEPGSISFELFSTFCDPRNEDHDLEKLKFLCLLRKSGGI
Length786
PositionTail
OrganismDictyocaulus viviparus (Bovine lungworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Trichostrongyloidea> Dictyocaulidae> Dictyocaulinae> Dictyocaulus.
Aromaticity0.08
Grand average of hydropathy-0.034
Instability index48.77
Isoelectric point6.59
Molecular weight90114.49
Publications
PubMed=26856411

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03224
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.98|      24|      32|     541|     564|       1
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  541-  564 (46.92/36.80)	KKAW..LYAQR.QNWASPNVL.RLIDH.C
  570-  598 (32.06/22.54)	HKAWfeFYMHHmMKLRCPDVMdRAIETiC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.21|      15|      32|     621|     652|       2
---------------------------------------------------------------------------
  605-  619 (26.62/30.39)	PQETLITACVLMVDF
  636-  650 (26.59/ 8.01)	PLVKLLTQVMLMSVW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.05|      13|      32|     491|     504|       3
---------------------------------------------------------------------------
  491-  504 (21.82/16.66)	LFTRMvCRRQLD..EM
  525-  539 (22.23/12.00)	LFPPL.HRRQIPdkEM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.04|      26|      58|     263|     297|       4
---------------------------------------------------------------------------
  263-  297 (29.76/39.73)	LSAIQARHVIDKlwNMQ.eklMTVLTRLIgsggYAF
  323-  352 (42.28/24.24)	LSESPSNVCVDR..NMTfdltFTMLTRIV....YKY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.08|      28|      33|     111|     138|       5
---------------------------------------------------------------------------
  111-  138 (50.49/32.73)	IPHLQNVSNRCSFSHVSDC...LAMTKAVID
  144-  174 (42.59/26.54)	VEGMQRRSGIRSLTAVFSCfrvLAPVDEVAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.54|      61|     399|       7|      72|       6
---------------------------------------------------------------------------
    7-   72 (95.08/74.00)	PPWV....ADVVCRLwGEQGSVFD.LSSQLRELLSSIkPQTDELLIlaqEFF.....LTATMS..SHPDQRMLECLKM
  402-  474 (87.46/52.38)	PPEVkaayKERVLRL.KERQLFWDpVKCNYGQLLHDM.PIVGEVIL...DFFkdrkhIEEDISppSEARRQMARCIKM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03224 with Med24 domain of Kingdom Metazoa
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