<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03223

Description Uncharacterized protein (Fragment)
SequenceMIGFDPGLVLLRQLRTRVTRLHNLLFHSPLPPRETWHVYFRRVDRMDREFRDCFDNLESYAKGLPNQLPQIEPLNRLRAVFQEEQLDVQIMETIEAMIDCENWNEGNFQTYMYLGEFLRLQRRRPSNMVHRPLPCSYWSTGVSPHAQFESAFAQFQKELLKNKTGIFPAFLERTAVGSIVELRFGVLFEKQIVFTQKMLMVEHAGMIEHITFVAPHEEWSFCTDFGEKRIDLNKISQYTVYQKLSAQANIHLTQAINTQEYEPMSIKSMELMLSGQRKRCISLVVLLRNFNISLKRPVGSASGFFVTKQDVIRVLQYIRQMYEHIRLCNESFQKALAEIEPVVVANSQYIARSSIVRYAGRLTDYVCKLSSQRLNEMTTESTRKKNFSFSTDIHRINSIHPQNYEFNGLSIELQRFILCDR
Length421
PositionTail
OrganismDictyocaulus viviparus (Bovine lungworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Trichostrongyloidea> Dictyocaulidae> Dictyocaulinae> Dictyocaulus.
Aromaticity0.11
Grand average of hydropathy-0.307
Instability index52.51
Isoelectric point8.92
Molecular weight49417.40
Publications
PubMed=26856411

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03223
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.28|      51|     142|     221|     273|       1
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  221-  273 (82.88/60.91)	FCTDFGEKRidLNKISQYTVYQK.LSAQANIHLTQAINTQEYE..PMSIKSMELML
  365-  418 (78.40/51.35)	YVCKLSSQR..LNEMTTESTRKKnFSFSTDIHRINSIHPQNYEfnGLSIELQRFIL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     297.51|      93|     111|      10|     103|       2
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   10-  103 (160.27/105.00)	LLRQLRTRVTRL.HNLL....FHSPLPPRETWHVYFRRVDR.MDREFRDCFDN.LESYAKGLPNQLpQIEPLNRLRAVFQEEQLDVQ...IMETIEAMIDCENW
  117-  219 (137.24/84.93)	FLRLQRRRPSNMvHRPLpcsyWSTGVSPHAQFESAFAQFQKeLLKNKTGIFPAfLERTAVGSIVEL.RFGVLFEKQIVFTQKMLMVEhagMIEHITFVAPHEEW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03223 with Med27 domain of Kingdom Metazoa
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