<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03217
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MSLVELTRNCYQSGVSASRWLNLCRVFIQNDAMLQTLEKEDVQRQLADSVILVFRDYPGDLELKSYLDRAIQERELALNVYVSTFLKAAQSTALHNAATLDLLCQVVIRAQDVGPTIGSIVAFNEIPEVVLGLLRDSLALVHIAYKVQQSSSFHYVTESAEQVAVYLATCVTRPMLEELSNMDLIFLCTENVSALISQHELQSHTRSVLEAFRMTIHAAFGDSDVQMMQSLTVVLGKGDVIGPNSLSDTITPGMVLHHFIMNRAGPFGSGSLKGATAFLVATFHWSSWSPTVFYSQLFVSAFQSLSQKKGPVAILWRSFIIGRLPSILASFEDAMKQDSHPDWKVAMQRAMSNVQQRKDTMNLSEHRIAEAEGVEATHVSLFRVLLASLVAAGLLEENFATSLDPGMPVAKVHPLLADAQIAGMGTDFEGYIAMKIPVDVSSEDLTLFVERVCKDPAAHATFSKILLERVVAMTTSMEVEGLSNVCKILSTHGLILDIFSLYVPVSGLLRHLILFIDKYDCETVGDPQTAVSYLGEIVLFTQYALTYFNMDETSFKDEDGTVSPRFLQTTAEVRTPDRMSTSHATAFKTWFQTLFDSSSDGIEDGILRSSQPKILLQISASLIFAAIKAKDEHKIDNEVLNNGVSFFKEQLLNWTSLGILKALTREVHQSGFKQSTHLDVLQQLLTAPHCPKTAIRLCGSQIIATLSSKNAKACTTFEVGNLQSRVAEVLGDTEIGRISRALTSTAPNSWHDQVRPVIYNALDQARSGQSIFIDVNRLSRSTTPTKLLQSLWNEVSVAASIGPAGIGGVGVSPASDLENCRRIATFVLTVPLTPTCPPLLPIFLHRVLPSVILSLDALDATQQMNHIEILVILISSVMTFALHLELALRGTLWEKHSVLGENIIFAAKRLASDLRGMKPSPTSMAILQRLGSAQSFVSNFPVFMNSDTAGP |
Length | 951 |
Position | Tail |
Organism | Cylindrobasidium torrendii FP15055 ss-10 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes>
Agaricomycetidae> Agaricales> Physalacriaceae> Cylindrobasidium.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.160 |
Instability index | 46.10 |
Isoelectric point | 5.77 |
Molecular weight | 104379.90 |
Publications | PubMed=25683379
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP03217
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 194.94| 63| 78| 595| 670| 1
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595- 658 (98.46/64.13) FDSSS..DGIEDGILRSSQPKILLQISASLIFAAIKAKDEHKIDNEVLNNGVSFFKEqLLNWTSLG
672- 736 (96.48/76.14) FKQSThlDVLQQLLTAPHCPKTAIRLCGSQIIATLSSKNAKACTTFEVGNLQSRVAE.VLGDTEIG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 97.58| 31| 77| 23| 56| 3
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23- 53 (52.36/51.76) LCRVFIQNDAMLQTLE........KEDVQRQLADSVILV
103- 141 (45.22/32.42) LCQVVIRAQDVGPTIGsivafneiPEVVLGLLRDSLALV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.99| 16| 39| 737| 752| 4
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737- 752 (29.66/18.10) RISRALTSTA..PNSWHD
777- 794 (24.33/13.60) RLSRSTTPTKllQSLWNE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 114.87| 36| 39| 466| 502| 8
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466- 502 (53.69/46.96) LLERVVAMTTSMEVEGLSNVCKILSTHGLILdIFSLY
508- 543 (61.18/47.95) LLRHLILFIDKYDCETVGDPQTAVSYLGEIV.LFTQY
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