<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03193

Description Uncharacterized protein
SequenceMDVPRSTVDQSTLRSQREELRSSCRPAAYNSPTNEISMEGAVFNLPGRLDELLRRHRSILPKGAEDEIPLIKQDLEEIISILHGHCSEPKLEDHAMVVKCWMKEVRELSYDIEDCIDQYEEFIEQYEHVAAARYYVRRRKFNRRHGNKLPPWVPEKLKQRLWMANKIREFSLRVQEVIQRYTMYKNDLTGIASTASTTTTTIISDVSSSSSSHPAPGGKCGYVGIDAATNKIEDWLTDGEHKKLKVVSIVGVGGVGKTTLANELYRKLGHQFEYRAFVRSSHKPDMRSILISMLSQIHPQQPPDNWKVHNLISSIRTHLKDKRYLIIIDDLWSTSTWDIISCTLPDGNSCSRILTTTEIEDLALQSCSYDSKYIFEMKPLGEEDSRNLFFSTVFGSRPTCPPELSEASYDIVKKCGGLPLAVVTIASLLASQLEKQEQWDYINKTLGYSLMANPNLEGMKQLLSLCYNSLPQHLKACMLYFSTYQEDTIIWKDDLVNQWIAEGFICAIEGHDKEEISRAYFDELVDKKIIQPVHINDNGEVLSCVVHYMVLNLITNTSIEENFIIAIDHSQATTRLADKVRRLSIHFSNVEDATPPTNMRLSQVRTLAFSGVLKCMSFITGFRLLRVLILHIWGDEDSISVNLNKISELVRLRYLKVTSNVTLELPTQMQGLQYLETMKIDGKIGAVPSDIIYLPGLLHLSLPAKTNLPNGIFHLISLRTLGYFDLGCNSIENMQSLGELTNLQDLQLTYSTAHSDDLKNYMQCLGSILEKLKSLKSITLSRADSSDANTLHIESAISMRISVDGWSNLSSPPALLQRIELLPCVCIFSSIPNWIGKLGNLCILKIGIREVTRSDVDVLGRLPALTVLSLYVHRKPMERIIFDNVGFSILKYFKFRCIVAWMKFEAGAMPNLQKLKLGFDVRRADQHGTIPVGIKHLSGLKEISAKIRVACTVDDLCKGFAESELTNAIRMHPGRPRVNIRCIDWTFDGKDDNNVGTREEESTTFEKQHHIVKVDSTVKFAVPEKDPGREADKSIDRRHPYYLHVPGSSAAMDDAAQAAHRRSDISSEVEAVEVGEARPAAAADKVFVALGADVVHGKSTLQWALQNLAKDGTKIVIAHVHRPAHMVPTALGPIHHKVLDPREVNYYRKKEREKAEEKLDQYLLICRELKVSCEKLIIEEEDIAKGLEDLIAIHGITKLVMGTAACRHNSGRPMSMKARKIWEAAESSCKIWFTHNGHLICTREGNTTVPAISPTPFINIVEIVRKTFRYYSSINSDIVRVSGSTRRAAQQPLYEPDDDHFASPRELENSGDDAVSEAQDLRQKNKQRISAMPWKEQYTEFSSSELKQAARHFDCEMIGKSRFGSVYKGTLRNTTVAIKLLDGHSMQGQSKEFDKAVADISRVRHPNLVTLIGACPESFALVYEFLPKGNLDDRLKSENPLRSRKPPLTWQERTKIIYEICSVLTFLHSNKPPIVHGDLQPANILFDANLVSKLGNLGIYRLQLNTTSPDAIRLMGNFMYMDPEFCRTGRLTTHSDVYSLGIIILQLLTGKNHDWMIAEVMKEAIKRGKLHSILDPSAGNWPLVQAKHLAHLGVRCAKFRRKDRPDLAGDVWKVVEPLMKAASRTAGRAPSSDVPPPDFVCPVIQLIRGWLDSGNDTTPMTSLELQHRELIPNRALRLAILKWQQEEEQKQSVCTSRSSMPGASS
Length1705
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.287
Instability index48.45
Isoelectric point7.90
Molecular weight192248.64
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ADP binding	GO:0043531	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process
defense response	GO:0006952	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03193
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.76|      35|      37|      45|      79|       1
---------------------------------------------------------------------------
   13-   42 (27.09/14.02)	........LRSQREELRsscRPAAYNSPTNEISMEGAV
   45-   79 (55.01/37.53)	LPGRLDELLRRHRSILP...KGAEDEIPLIKQDLEEII
   82-  116 (58.66/40.60)	LHGHCSEPKLEDHAMVV...KCWMKEVRELSYDIEDCI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.46|      18|      37|     723|     741|       2
---------------------------------------------------------------------------
  723-  741 (27.81/22.02)	YFD.LGcNSIENMQSLGELT
  761-  779 (25.65/14.04)	YMQcLG.SILEKLKSLKSIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.06|      41|     843|     782|     834|       4
---------------------------------------------------------------------------
  568-  612 (60.82/32.10)	DHSQATT.RLADKVR.RLSIH.FSNVedATPPTnmRLSQVRTL....AFSGV
  784-  831 (51.24/57.69)	DSSDANTlHIESAISmRISVDgWSNL..SSPPA..LLQRIELLpcvcIFSSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     647.52|     203|     653|     833|    1049|       6
---------------------------------------------------------------------------
  833- 1049 (315.98/276.62)	NWIGKLGNLCILKIGIREVTRSDVDVLGRLPALTVLSLYVHRKPMERIIFdNVGFSILKYFKFRCiVAWMKFEAgAMPNLQKLKLG..FDvrraDQHGTIP.VGIKHLSGLKEISAKIRVACTVD...DLCKgFAESELTNAIRMhPGR......PRVNIRC.IDWTFDGKDDNnvGTREEESTTFEKQHHIVKVDSTVKFAVPEKDPGREADKSIDRRHPyylHVPGSS
 1489- 1704 (331.54/239.46)	NLVSKLGNLGIYRLQLNTTSPDAIRLMGNFMYMDPEFCRTGRLTTHSDVY.SLGIIILQLLTGKN.HDWMIAEV.MKEAIKRGKLHsiLD....PSAGNWPlVQAKHLAHLGVRCAKFRRKDRPDlagDVWK.VVEPLMKAASRT.AGRapssdvPPPDFVCpVIQLIRGWLDS..GNDTTPMTSLELQHRELIPNRALRLAILKWQQEEEQKQSVCTSRS...SMPGAS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03193 with Med32 domain of Kingdom Viridiplantae
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