<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03185

Description Uncharacterized protein
SequenceMQRYTGAGHNAGFGGGVPGRGVVAGGREKGRLEPSSFHGANYPANLRRQPQVAPYKLKLGAPDFYPQTLSCAEETLTKEYVQSGYKDTVEGIEEAREIVLSQIPYLSKPDIATKCKEALKKLFRAINESRAQKRKAGQVYGVPLSGSLLTKPGMYPEQMHSNEDTRRKWIEALVQPNRRLWSLAEQVPRGFRRKSLFNYLIRYNVPLLRASWLVKVTYLNQVQTSSNNVSSAAPDSLRSQHWTKDVIEYLQLLLDELCSKNGFFGLPSSQEQSLPCLVAGDSPIKLKTGASPASADVEEPSLHFKWSYMIRIVQCHLMEQLLVPSLLIEWVFNQLQERDSTEVLELLLPIVLSLVDTITLSQTYIHMLVEILIQRLSDASPGSLSVKNNPKRSSITSALVELLQYLILAVPDTFVSLDCFPLPSVVAPDVYSKGALLKIAGGGKIASSRRQNASRHLSCGYAICSVQRRASDLSLVANPNLQVRGAANVVQALDKALVTGNLTAAYTSVFNYLSDTLMEETWIKEVSPCLRSSLMWMGAVELSLVCSVFFICEWATCTFRDCRTSQCQNVKFSGSKDFSQVYLAVSLLKDKMNEINNLSSSKSSSQLAMKDHLKSGTLNNSSIKVTAMETASGFRDSTGSIDENNKKDIFSSPGPLHDIIVCWLDQHEISDASGFKSVDVFMTELIRSGIFYPQTYVRQLIVSGITIWNDSLFDLEKKTRHYKILKHLPGFCLFNILEEAKIAEDQVLYEIVSTYSSERRLVLSELSSGLATDANVEGRVPLSSCLQKQPDLLMDSTDDNHGRVAVQVEEVKLMISGREETKKTKKGQTDLVDSEEDVGHAKTGCKDSSRTKRQKLDKNVFPFQGSPLVQSDEEDFWWARKEQKQELFTVETIHQSIEQTSGGKATVVQMTQNIAQLAAARIDGSQGASTSHVCDNNLSCPHHKPGTNSDILKDAYHMSMLTLAEVGKSLKRLRLLERRSISIWLLKSIKQLIEGDEGKHSKANNSISASTVQHSGKIASGWRFGEDELLSVLYIMDTCCDLLSSVRLLIWLLSKIYIGMTTSGQVGRGVMHPKHKENQVFQVAEAFLFSSLLRYENILIAMDLLPEVLSVSMNRTVHKSGERQSTSVAFAYARYFLRKYRDVTSVARWERNFRSTSDKRLLAELDSGKSITGDSIISGISSGEELDGHVHKKLNGKAGVLPSMKEIVQRQTDEFLRNLRENNATAPKNPSFSETEDSYQTAHDIVLGLADCIRQNGGANPDGDHSLVASAVSAIVDNAGHAIAKHLDISGGNNPGVTSINSLNLIQHILNIHINSLALLRETLGDRFSRIFEISLAVEASSAVAASFAPPKAHRSQQSSETHDESGNHANEVPSNPSKCFNVKAVKVSAAVSALVVGAIIYGVVSLERMMVVLRLKEGLDILQFLRISKASTNGVTHSIGNFKIDSSTEVLVHWFKILIGNCKTVYNGVIAEILGDSYVLAFSRLQRMLPLGIVLPPAYSIFAMVLWRPYLYDTSTSNHEDIQLYQSLLGAISDITRHQPFRDVCFRNMHLFYDLLAADVGDSEFAAIVELRSPDECLKALSPLRARVFLNALLDCEIPVTMRDDGTYALEPGCAEASTKNDVKFPERLIEILNVLQPAKFHWQWVELRLLLDEQSLIEKPKNVPYVKALRSLSPNAENFTLSEREKGLTEVILSRLLVRPDAAPLYSELIHLLGKLQESFVMGIKWFLQGQDVLLGNNSVRQQLVNLTQRKGFPMKTQFWKPWGWSKLVGYANANKSSKRKLEVTSIEEREVDGLIDSRKSSNSKSLNVGTSPEGHGSTQKYFTQEALAELVLPCIDRSSSEFRVVFAGDLIKHMGVISEHIKAAVWNGINKLNSSNPSGNEGLSKPNGRKGIFSGSPNIRKHSPVPNDSTTPSASALRSSIWLRLQFIIRLLPVIIADSNMRQTLASSLLSLVGTRVVYEDADSLEPYMDDVLLDCPSENLFDRLLCVLHALLGNSQPSWLKTKPSSKPAVKFLRDLSAIDKEVTKSLQCALDRMELPATIRRRIQVAMPILPTSRLSSITCGPPLLSSAALSPFQCSTSTAGPYQQFPLNWIPTNLSSRCKAALPSQDPNMEIDPWTLLEDGTSCPNTNSGSNSANGVTGDHANLKACSFLKDSVRVRRTDLTYIGSLDEDS
Length2176
PositionKinase
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.195
Instability index47.43
Isoelectric point8.10
Molecular weight240905.48
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03185
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.83|      10|      33|    1257|    1267|       1
---------------------------------------------------------------------------
 1257- 1267 (16.51/13.26)	GGANPdGDHSL
 1291- 1300 (20.31/10.82)	GGNNP.GVTSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.69|      45|     624|    1165|    1215|       2
---------------------------------------------------------------------------
 1165- 1215 (67.38/66.47)	LDSGKSITGDSIISGISsgEELDGHVHKKLNGKA...GVLPsmkeIVQRQTDEF
 1798- 1845 (74.31/54.13)	IDSRKSSNSKSLNVGTS..PEGHGSTQKYFTQEAlaeLVLP....CIDRSSSEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     194.08|      64|     624|      64|     134|       3
---------------------------------------------------------------------------
   64-  134 (100.54/88.68)	FYPQtlscaeeTLTKEYVQSG...YKDTVEGIE.EAREI.VLSQIPYLSKPDIATKCKEALKK.LFRAINESRAQKR
  691-  760 (93.54/67.10)	FYPQ.......TYVRQLIVSGitiWNDSLFDLEkKTRHYkILKHLPGFCLFNILEEAKIAEDQvLYEIVSTYSSERR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.83|      17|     623|    1363|    1449|       4
---------------------------------------------------------------------------
 1329- 1346 (23.04/21.73)	SRIFEISlAVEASSAVAA
 1378- 1394 (28.79/72.74)	SKCFNVK.AVKVSAAVSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     134.96|      34|      36|     812|     847|       5
---------------------------------------------------------------------------
  776-  809 (39.17/21.12)	...VEGRVPLSSCL...QKQPDlLMDS.TDD.NHGRVAVQvE
  812-  847 (51.02/37.06)	KlmISGREETKKTK...KGQTD.LVDS.EEDVGHAKTGCK.D
  850-  885 (44.77/25.93)	R...TKRQKLDKNVfpfQG.SP.LVQSdEEDFWWARKEQK.Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.00|      13|      15|    1123|    1136|       6
---------------------------------------------------------------------------
 1123- 1136 (19.67/19.52)	RQSTSVAfAYARYF
 1141- 1153 (25.33/18.34)	RDVTSVA.RWERNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.87|      11|      15|     889|     899|       7
---------------------------------------------------------------------------
  889-  899 (18.91/13.40)	TVETIHQSIEQ
  906-  916 (18.96/13.44)	TVVQMTQNIAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.32|      10|      15|     442|     451|       9
---------------------------------------------------------------------------
  442-  451 (17.33/10.21)	GGKIASSRRQ
  460-  469 (18.98/11.97)	GYAICSVQRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.97|      39|      55|    1558|    1596|      10
---------------------------------------------------------------------------
 1558- 1596 (64.67/40.45)	AADVGDSEFAAIVELRSPD...ECLKALSPLRAR...VFLNALLD
 1610- 1654 (53.30/32.00)	ALEPGCAEASTKNDVKFPErliEILNVLQPAKFHwqwVELRLLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.40|      41|     623|     365|     413|      12
---------------------------------------------------------------------------
  345-  373 (17.64/13.18)	.......................ELLLPIVLSLVDT....itlsqtyIHMLVEILI
  382-  413 (43.96/24.72)	GSLSVKNNPKRSSITSALV....ELLQYLILAVPDT....................
 1005- 1058 (52.80/23.08)	NSISASTVQHSGKIASGWRfgedELLS..VLYIMDTccdllssvrllIWLLSKIYI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.80|      52|      72|     559|     616|      15
---------------------------------------------------------------------------
  559-  616 (76.17/60.69)	FRDCRTSQCQNVKfsgsKD.FSQ...VYLAVSLLKDKmNEINNLSSSKsSSQLAMKDHLKSG
  634-  689 (83.63/48.27)	FRDSTGSIDENNK....KDiFSSpgpLHDIIVCWLDQ.HEISDASGFK.SVDVFMTELIRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.06|      55|    1612|     245|     301|      16
---------------------------------------------------------------------------
  245-  301 (91.19/64.85)	DVIEYLQLLLDELCSK..NGFFGL....PSSQE.QSLPCLVAG...DSPIKLKtgASPASADVEEPS
 1852- 1916 (78.87/49.39)	DLIKHMGVISEHIKAAvwNGINKLnssnPSGNEgLSKPNGRKGifsGSPNIRK..HSPVPNDSTTPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03185 with Med12 domain of Kingdom Viridiplantae
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