<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03180

Description Uncharacterized protein
SequenceMAADAIITETGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPPLWAGFAPLASYLFSLQDYLVSEGAQTKKQAQVDNETTEVASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANFGGQPPTQTVWSTRVNKSIPPSEDLKNPQSYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFEQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTTGSSQMQEWVQGAIAKISNNTDGAANAAPNPISGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIPANAQKSSDSSMQKQHLMNSKTEDNTLAVRSGLGAAKLEDGTTSRGQMIGAKGAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPSSQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNTRQLKINGSTNRHLSDMEEDGDSSFGIQNLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLEGEWYKCIRCLRQTCAFAQPGALAPNTSNELEAWWISRWTHACPMCGGTWVKVV
Length956
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.169
Instability index44.44
Isoelectric point6.08
Molecular weight103001.32
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03180
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.01|      13|      14|     656|     668|       1
---------------------------------------------------------------------------
  656-  668 (23.35/16.62)	KQHLMNSKTEDNT
  672-  684 (21.66/14.87)	RSGLGAAKLEDGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.93|      29|     198|     168|     248|       2
---------------------------------------------------------------------------
  195-  228 (46.79/82.51)	QPPTQTvWSTRVNKSIPPSEdlknPQSYVPMPTT
  801-  829 (59.14/11.18)	QPPAEE.WHRRNMFGGPWSE....PDDLGPLDNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.42|      41|     432|      20|      76|       4
---------------------------------------------------------------------------
   35-   76 (70.88/67.87)	LGNGIQaTAKINATSSLP.P.SLNPPLWAGFAP.....LASYLFSLQDY
  445-  492 (57.54/25.76)	LGKGIE.SALINPSTLLPePwQASSDMLSSIGPdkmtvDPALLLSIQGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.54|      19|     198|     168|     192|       5
---------------------------------------------------------------------------
  126-  158 (28.22/12.15)	WGSGVTSVAFDPTRGgsvitvvivegqymSPYD
  173-  191 (37.33/12.64)	WESSVQPVVLHPIFG..............SPAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.95|      22|      30|     253|     282|       7
---------------------------------------------------------------------------
  253-  279 (31.10/35.52)	PNdvrqLAQiVYSAH...GGEVA.VAFLRGG
  286-  311 (32.85/14.06)	PN....FEQ.VDSYHvnvGSAIApPAFSSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.85|      43|     109|     581|     626|       8
---------------------------------------------------------------------------
  581-  626 (71.15/60.65)	GAANAAPNPISGRSSFMPiSINTGTFPGTPAVRLIgdCHFLHRLCQ
  692-  734 (73.70/50.59)	GAKGAEENPVGNKSARIG.SGNAGQGYTSDEVKVL..FLILVDLCK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03180 with Med16 domain of Kingdom Viridiplantae
Unable to open file!