<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03178

Description Uncharacterized protein
SequenceMATPSTAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPFFSYNGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSPPPSLLGRPMTPSASPFPQTSQSPTAFQQLGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSFSGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCARDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMATKLKQSDTKEKSDTDGKQRRSSDPPRRR
Length1046
PositionUnknown
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.808
Instability index61.43
Isoelectric point8.45
Molecular weight113416.94
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03178
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     344.65|      42|      43|     172|     213|       1
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   42-   84 (51.34/14.13)	TPavvdS.A.VEGDAPAAP.APTSGSGPAAPSM........PANPASP......AT...PGPP
  127-  162 (35.04/ 7.40)	...........SPPAMMA....PSVA...AAAL........QPPVPGQYfgnR.PFfsyNGTN
  172-  213 (88.62/29.53)	PP....S.S.LQPPAPMNL.ARPSSAFPGAGAM........PPNPPGSI...RLPF...PGPP
  223-  254 (47.32/12.47)	SP....Q.Q.AQPQASRSD.TR.........SV........PEASPQTM...QLS....TGPP
  261-  292 (38.32/ 8.75)	SP....SiT.VQMPTNPSLpTRP.EVFGAVGA......................SV...PGQP
  293-  318 (34.76/ 7.28)	......S.TiLSPP.PSLL.GRP.........M........T..PSAS......PF...PQTS
  320-  361 (49.25/13.27)	SP....T.A.FQQLGQQQL..YPS..YPSAHGVqpqplwgyPPQPTG........F...QQPP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     177.59|      43|      43|     824|     866|       2
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  692-  735 (41.55/23.74)	..........................RFKAIpSHSRRRSTFEQ...............YVrtrADEERKEKRAAQRAAVEAYKQL
  736-  813 (30.66/15.62)	.LEeasedinsnkdykefkrkwgtdpRFEAL.DRKERDALFNEkvksieekvqsvrnaVI...AEFKSMLRESKDITST..SRWT
  814-  863 (61.82/38.86)	KVK................enfrsdaRYKAM.KHEEREVAFNE...............YI...AELKSAEKEAEQAAKAKLDEQA
  864-  905 (43.56/25.24)	KLK......................eREREMrKRKEREEQEME...............RV....KLKIRRKEAVSSYQALLVE..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     254.87|      48|      49|     527|     574|       3
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  367-  407 (32.11/ 9.04)	..SGllgplgrPMVGSSSVTAYLPSI..........QPP..GVSTTD...RDSKELSS..
  408-  445 (49.46/17.46)	ANPG...........SEQPTQQ.GS.QNSDQLE.DKRTT..AIQDS.....DSWSAHKT.
  527-  574 (77.58/31.11)	AESG.......PLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG...RDSLPLRQTV
  577-  625 (46.32/15.94)	ASSS.......ALDLIKKKLQDAGA....SSVPSPLATPssASELNGsktTDAAPMGHQV
  636-  677 (49.40/17.43)	SGDG.......NMSDSSSNSDDEEHGPSEEECTRQFKVE..MLK..E...RGVLPF....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.29|      31|      44|     953|     996|       4
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  953-  996 (47.21/41.66)	RCARDFRALLSEVITPEiaarttdegktaiNSWTEAKGLLRSDP
 1012- 1042 (54.07/26.61)	RYADDMATKLKQSDTKE.............KSDTDGKQRRSSDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.98|      19|      49|     448|     466|       5
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  448-  466 (34.52/19.95)	GVVYYYNALTGE..STYQKPP
  479-  499 (24.28/11.89)	PVPVSWDKLAGTdwSIVTTSD
  500-  518 (34.17/19.68)	GKKYYYDNKLKV..SSWQLPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.62|      12|     233|     680|     691|       6
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  680-  691 (23.36/13.65)	WEKELPKIVFDP
  914-  925 (23.26/13.55)	WTESKPRLEKDP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03178 with Med35 domain of Kingdom Viridiplantae
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