<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03177

Description Uncharacterized protein
SequenceMATPSTAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPFFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASRLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSPPPSLLGRPMTPSASPFPQTSQSPTAFQQLGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSFSGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCARDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMATKLKQSDTKEKSDTDGKQRRSSDPPRRR
Length1079
PositionUnknown
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.797
Instability index60.70
Isoelectric point8.28
Molecular weight116757.47
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03177
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     163.66|      28|      28|      72|      99|       1
---------------------------------------------------------------------------
   72-   99 (58.27/16.94)	PANPASPAT.....P..GPPRPQ...FAGSPAYASPPA
  186-  213 (35.52/ 7.69)	VSRFVPPSS.....L..QPPAPM...NLARPSSAFPGA
  217-  250 (36.51/ 8.09)	PPNP..PGSirlpfP..GPPRPSintFVASPQQAQPQA
  370-  395 (33.36/ 6.81)	PSAHGVQPQ.....PlwGYP.PQ...PTG...FQQPPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     284.53|      38|      68|     946|     983|       2
---------------------------------------------------------------------------
  713-  746 (44.54/23.99)	.WEKELPKIVFDPRFKAI.PSHSR.....RRSTFEQYVRTR
  781-  814 (49.00/27.20)	DYKEFKRKWGTDPRFEAL..DRKER...DA..LFNEKVKSI
  844-  877 (49.73/27.72)	RWTKVKENFRSDARYKAMKHE.......EREVAFNEYIAEL
  884-  922 (28.26/12.30)	AEQAAKAKLDEQAKLKEREREMRKRkerEEQEMERVKLK..
  946-  983 (59.96/35.07)	SWTESKPRLEKDPQGRAVNPDLGKG...DAEKLFRDHVKDL
 1017- 1050 (53.05/30.10)	SWTEAKGLLRSDPR....YNKLASK...DRESIWRRYADDM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.80|      10|      15|       4|      14|       3
---------------------------------------------------------------------------
    4-   14 (15.79/10.17)	PStAASDATNP
  134-  143 (17.01/ 6.07)	PS.VAAAALQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     225.35|      48|      49|     560|     607|       4
---------------------------------------------------------------------------
  441-  478 (49.44/23.33)	ANPG....SEQPTQQ.GS.QNSDQLE.DKRTT..AIQDS.....DSWSAHKT.
  560-  607 (78.21/41.60)	AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG...RDSLPLRQTV
  610-  658 (48.80/22.92)	ASSSALDLIKKKLQDAGA....SSVPSPLATPssASELNGsktTDAAPMGHQV
  669-  710 (48.90/22.98)	SGDGNMSDSSSNSDDEEHGPSEEECTRQFKVE..MLK..E...RGVLPF....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     168.40|      32|      35|     254|     288|       5
---------------------------------------------------------------------------
   27-   66 (35.99/ 8.10)	ESEgpfdSGVVAAATTPAVVDSAvegdaP.AAP.APTSGSGP
  254-  286 (52.66/23.93)	PSN....SGSSDVSTSRSDTRSV.....PEASPqTMQLSTGP
  331-  354 (45.07/12.59)	PPP....S.....LLGRPMT........PSASP.FPQTSQSP
  408-  430 (34.67/ 9.42)	RPM....VGSSSV......TAYL.....PSIQP..PGVST..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.66|      22|      51|     100|     125|       6
---------------------------------------------------------------------------
  100-  125 (37.32/29.11)	PAFSYNVLPRPSPrpqvGSGAAQQ.QL
  154-  176 (38.34/19.95)	PFFSYNVVSHANA....GLPTGQQfQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.65|      26|      62|     752|     778|       7
---------------------------------------------------------------------------
  752-  778 (39.08/23.59)	KEKRAAQRAAVEA.YKQLLEEaSEDINS
  815-  841 (39.58/20.07)	EEKVQSVRNAVIAeFKSMLRE.SKDITS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.02|       9|      28|     290|     299|      10
---------------------------------------------------------------------------
  290-  299 (12.17/ 8.32)	STAGSPSiTV
  320-  328 (17.85/ 8.00)	SVPGQPS.TI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03177 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVK
2) AGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSFSGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFK
3) AGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASRLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSPPPSLLGRPMTPSASPFPQTSQSPTAFQQLGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMV
4) APAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAA
5) ELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAP
6) MATPSTAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYA
7) RYADDMATKLKQSDTKEKSDTDGKQRRSSDPPRRR
8) SSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSW
884
625
166
99
555
1
1045
413
920
698
411
138
609
95
1079
473










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYYYD
2) LDLIKKKLQ
3) SIWRRYADDMATKLKQ
4) VFDPRFK
533
615
1041
721
539
623
1056
727