<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03177

Description Uncharacterized protein
SequenceMATPSTAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPFFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASRLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSPPPSLLGRPMTPSASPFPQTSQSPTAFQQLGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSFSGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCARDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMATKLKQSDTKEKSDTDGKQRRSSDPPRRR
Length1079
PositionUnknown
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.797
Instability index60.70
Isoelectric point8.28
Molecular weight116757.47
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03177
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     163.66|      28|      28|      72|      99|       1
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   72-   99 (58.27/16.94)	PANPASPAT.....P..GPPRPQ...FAGSPAYASPPA
  186-  213 (35.52/ 7.69)	VSRFVPPSS.....L..QPPAPM...NLARPSSAFPGA
  217-  250 (36.51/ 8.09)	PPNP..PGSirlpfP..GPPRPSintFVASPQQAQPQA
  370-  395 (33.36/ 6.81)	PSAHGVQPQ.....PlwGYP.PQ...PTG...FQQPPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     284.53|      38|      68|     946|     983|       2
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  713-  746 (44.54/23.99)	.WEKELPKIVFDPRFKAI.PSHSR.....RRSTFEQYVRTR
  781-  814 (49.00/27.20)	DYKEFKRKWGTDPRFEAL..DRKER...DA..LFNEKVKSI
  844-  877 (49.73/27.72)	RWTKVKENFRSDARYKAMKHE.......EREVAFNEYIAEL
  884-  922 (28.26/12.30)	AEQAAKAKLDEQAKLKEREREMRKRkerEEQEMERVKLK..
  946-  983 (59.96/35.07)	SWTESKPRLEKDPQGRAVNPDLGKG...DAEKLFRDHVKDL
 1017- 1050 (53.05/30.10)	SWTEAKGLLRSDPR....YNKLASK...DRESIWRRYADDM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.80|      10|      15|       4|      14|       3
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    4-   14 (15.79/10.17)	PStAASDATNP
  134-  143 (17.01/ 6.07)	PS.VAAAALQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     225.35|      48|      49|     560|     607|       4
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  441-  478 (49.44/23.33)	ANPG....SEQPTQQ.GS.QNSDQLE.DKRTT..AIQDS.....DSWSAHKT.
  560-  607 (78.21/41.60)	AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG...RDSLPLRQTV
  610-  658 (48.80/22.92)	ASSSALDLIKKKLQDAGA....SSVPSPLATPssASELNGsktTDAAPMGHQV
  669-  710 (48.90/22.98)	SGDGNMSDSSSNSDDEEHGPSEEECTRQFKVE..MLK..E...RGVLPF....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     168.40|      32|      35|     254|     288|       5
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   27-   66 (35.99/ 8.10)	ESEgpfdSGVVAAATTPAVVDSAvegdaP.AAP.APTSGSGP
  254-  286 (52.66/23.93)	PSN....SGSSDVSTSRSDTRSV.....PEASPqTMQLSTGP
  331-  354 (45.07/12.59)	PPP....S.....LLGRPMT........PSASP.FPQTSQSP
  408-  430 (34.67/ 9.42)	RPM....VGSSSV......TAYL.....PSIQP..PGVST..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.66|      22|      51|     100|     125|       6
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  100-  125 (37.32/29.11)	PAFSYNVLPRPSPrpqvGSGAAQQ.QL
  154-  176 (38.34/19.95)	PFFSYNVVSHANA....GLPTGQQfQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.65|      26|      62|     752|     778|       7
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  752-  778 (39.08/23.59)	KEKRAAQRAAVEA.YKQLLEEaSEDINS
  815-  841 (39.58/20.07)	EEKVQSVRNAVIAeFKSMLRE.SKDITS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.02|       9|      28|     290|     299|      10
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  290-  299 (12.17/ 8.32)	STAGSPSiTV
  320-  328 (17.85/ 8.00)	SVPGQPS.TI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03177 with Med35 domain of Kingdom Viridiplantae
Unable to open file!