<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03175

Description Uncharacterized protein
SequenceMEAKLQHDHSKGQMGGRQQEQSPTQRRIPKRRRRGEANEAMATAVSPSPYPGDSPEPSFSGEKVYVAVGEESSRGTLLWALHKFPQGTAFVLLHVYSPPNFLPILGAKIPAGQLREQELIAHKKMNLQRISDNLDQYQLICAQQKVQAEKLVVESDDVAYGLVDVISEHNVSMLVMGAADDKHYTKKAAPFGHDVMQDCRQSATSAQCSVERSSSLSEIWCVSNTWLHKLNLEPHIETTSSDRYSDKEKEDTKERGESDNELQHIPMQLERVRQEAYEEKCRREKAEQELFEALQKVSENLYFGELKQKNEIEVKLATTMEEVDRLARTADELAAKFQEQCEKILVLEKRSAHSDRIIKDLMLQRDKAVREAEAIRVKNGESTAIADRTIPITELSISEIKEATSNFDHSSKVGESVYGSVYKGLLRQTNVAVKKLNPESTESLSQFSHEVEILSRVRHPNLVTLIGACKDARALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMLTDEFKATTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEVWTVLEPMLRSASSMLCSLSFKSVSEDFGNVPSYFICPIQQDVMRDPLIAADGFTYEAEAIREWFDSGHYTSPMTNLDLPHRDLLPNHALRSAIQEWLQRGQEKMDEEEIHIAVGKNFRKEKANILWAAARFPRATIVLVHVHWPSKWMPFMGGKVLYKFADEKEKEMHRAKETDAMVKMLSQYKNLCGSRKVRAHYLSHDDVLAGVVNLIKKLKIKRIIIGSSNDHLEHTGSIGYGGSAESLASVHELSDDSNGYTTPPSDFADEIMYDDGVIQMDGADELATETETEDEESIETGELNSYEEEGEHSSGETAHRTDEIQSFRSTTERAEELMEEIDKLQRKLKELQEEDDRSILSPRQKAAAASLKKEKRLSTGRYPELQLPQHISRFSMSMISKATGNFCSGNLIGEGGYGPVYKGKLGGVAVAIKLLRPHGRQGFPEYKQEVVVLSRMEHPHIVRLMGVCPESCGLVYEHLPNGTLLDTLSNSKSLSWKDRVRILGEQRSALAYLHSCRPHAIIHADLKLTNILLDAANSSRLGDFGTARAVHVKPLQDQADTICRRTNPMGTTGYMDPVFFVTGELTAESDVYAFGVVVLQVLTGLLDLNIADQVREALKMDAVHSVLDASAGSWPEVQAEKLLRLALRCCSLERKRRPAITCDAEWRSLDIMLRMANSPSKSRKWTSISIHAT
Length1354
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.443
Instability index48.19
Isoelectric point6.16
Molecular weight151862.80
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03175
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|    1489.09|     442|     656|     235|     690|       1
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   68-  217 (91.28/69.51)	..........................VGE..ESSRGTLLWALHKFPQGTaFVLLHVYSPPNFLPILGakipagqlreqeliahkkmnLQRISDNLDQYQLicaQQKVQAE.KLVVESDDV....................................................................................................................................................................................................................................................................................................................................................................................................ayglvdvisehnvsmlvmgaaddkhytkkaapfghdVMQDCRQSATSAQCSVeRSSSLS
  235-  690 (739.23/691.48)	HIETTSSDRY..SDKEKEDTKE....RGES.DNELQHIPMQLERVRQEA.YEEKCRREKAEQELFEA....................LQKVSENLYFGEL...KQKNEIEvKLATTMEEVDRLARTADELaaKFQEQCEKILvleKRSAHSDRIIKdlMLQRDKAVREAEAIRVKN.GESTAIA............................DRTIP.....ITELSISEIKEATSNFDHSSKVGESVYGSVYKGLLRQTNVAVKKLNPES...TESLSQFSHEVEILSRVRHPNLVTLIGACKDARALVYEYMPNGSLDDRLAckdNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRM.....LTDEfkaTTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEV.WT....................................VLEPMLRSASSMLCSL.SFKSVS
  753-  932 (149.05/118.54)	HALRSAIQEWlqRGQEKMDEEEihiaVGKNfRKEKANILWAAARFPRAT.IVLVHVHWPSKWMPFMG.....................GKV...LY....................................KFADEKEKEM...HRAKETDAMVK..MLSQYKNLCGSRKVRAHYlSHDDVLA.................................gvvnlIKKLKIKRIIIGSSN.DHLEHTGSIGYG....GSAESLA.SVHELSDDSngyTTPPSDFADEI..........................................................................................................................................................................................................................................................................................
  999- 1350 (509.53/439.48)	....................................................................................................................MEEIDKLQRKLKEL....QEEDDR............................................silsprqkaaaaslkkekrlstgrypelQLPQH.....ISRFSMSMISKATGNFCSGNLIGEGGYGPVYKGKLGGVAVAIKLLRPHG...RQGFPEYKQEVVVLSRMEHPHIVRLMGVCPESCGLVYEHLPNGTLLDTLS...NSKSLSWKDRVRILGEQRSALAYLHSCRPHAIIHADLKLTNILLDAANSSRLGDFGTARAvhvkpLQDQ...ADTICRRTNPMGTTGYMDPVFFVTGELTAESDVYAFGVVVLQVLTGLLDLNIADQVREALKMDAVHSVLDASAGSWPEVQAEKLLRLALRCCSLERKRRPAITCDAeWR....................................SLDIMLRMANSPSKSR.KWTSIS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03175 with Med32 domain of Kingdom Viridiplantae
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