<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03170

Description Uncharacterized protein
SequenceMAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPYFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAVVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQMQQMQQQQQQPQQLQQQQQPQMMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
Length761
PositionUnknown
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.356
Instability index53.34
Isoelectric point8.71
Molecular weight81324.22
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03170
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     803.04|     166|     166|     358|     523|       1
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   36-  147 (106.15/35.45)	...........................................................................VRSFCAHEMAGQKLAGT.PPELA.......LVVFHThgpysA..FCvQRSGWTKDMNVFL.SWLSGISfSGGGFSEAAISEG.LAE.ALMIL.QGSSSNSQNHqsheVQKHCILVAAS.NPYP..LPTP
  179-  304 (164.22/58.98)	SFAQCSV..SLSVVSP.KQLpTLK....AIYNAAKRNPRAADPS......VDHAKnP..YFLVLLSD.NFLEAR...TALSRPLPG........NLV.........................TNHPITKMDTAATSVPVPTSN.GNPSVNGPMLTRQ.PN..........GVVAN.......IKTEPTTL.....PPM..VSAP
  305-  480 (250.23/93.82)	AFSHVTPVAN.GVSQGlSSV.QSPspslISQETNLANDSVQEHKplinpiQQSIR.PGGPANVSILN.NLSQHRSVATIISGGMPGIPMSGT.GQSIGSQ.....QVVQNT.....A..FG.SNTPITGNSNIAVSSSLGGIQ.SNIGISGPPVTQG.GSM.GSTQLGQGGINTNQNM....ISSLGTTTVSS.APAM..MPTP
  481-  640 (203.23/74.78)	GMAQQAVVNSLGVTNS.SAM.NMP....IVQHPNAQQQQQQQQQ......QQQQQ.P.PPKYVKIWEgTLSGQRQGQPVFICKLEGYR.SGTaSETLAADwpetmQIVRLI.....AqeHM.NNKQYVGKADFLVFRTLN..Q.H..GFLG.QLQEK.KLC.AVIQLP......SQTL....LLS.....VSDkAGRLigMLFP
  688-  758 (79.21/24.54)	....................................QQMQQMQQ............MQQQQQQP..Q.QLQQQQQPQMMVGAGMGQQYMQGH.GRTV..Q.....QMMQ...........G.KMAP.............................QGpGSMpGAGSMPGGG.................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.68|      14|      16|     642|     656|       2
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  642-  656 (23.84/12.40)	LQQQQLQQhMQLQTQ
  670-  683 (29.84/11.59)	LQQQQMQQ.MQQQQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03170 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILN
2) ATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSN
3) LPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSH
4) QQQQQQIQQMQQMQQMQQQQQQPQQLQQQQQPQMMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
5) SAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEG
6) SNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAVVNSL
313
377
243
681
497
430
368
410
308
761
534
491










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKIW
527
532