<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03169

Description Uncharacterized protein
SequenceMAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPYFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAVVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGTGMGQQQPQMMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
Length785
PositionUnknown
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.369
Instability index53.33
Isoelectric point8.71
Molecular weight83811.05
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03169
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     834.16|     158|     159|     366|     523|       1
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   36-  195 (164.94/47.83)	...............VRSFCAH.EMAGQKLAGT.PPELA.......LVVFHThgpysA..FCvQRSGWTKDMNVFL.SWLSGISfSGGGFSEAAISEGLAE..ALMILQGSSSNSQNHqsheVQKHCILVAAS.NPYP..LPTPvyrPLVQSSdhKENNDGAKES.CLADAE....TVA.....KSF.AQCSVSLSV......VSPKQL
  224-  358 (145.85/41.57)	FLvllsD.NFLEAR...TALSR.PLPG........NLV.........................TNHPITKMDTAATSVPVPTSN.GNPSVNGPMLTRQPN..........GVVAN.......IKTEPTTL.....PPM..VSAP...AFSHVT..PVAN.GVSQGlSSVQSPspslISQ.....ETNlANDSVQEHKplinpiQQSIRP
  366-  523 (268.13/81.67)	IL....N.NLSQHRSVATIISG.GMPGIPMSGT.GQSIGSQ.....QVVQNT.....A..FG.SNTPITGNSNIAVSSSLGGIQ.SNIGISGPPVTQGGSM.GSTQLGQGGINTNQNM....ISSLGTTTVSS.APAM..MPTP...GMAQQA..VVNSLGVTNS.SAMNMP....IVQ.....HPN.AQQQQQQQQ......QQQQQQ
  531-  685 (179.30/52.54)	IW....EgTLSGQRQGQPVFIC.KLEGYR.SGTaSETLAADwpetmQIVRLI.....AqeHM.NNKQYVGKADFLVFRTLN..Q.H..GFLG.QLQEKKLC.AVIQLP......SQTL....LLS.....VSDkAGRLigMLFP...GLQQQQ..LQQHMQL.QT.QG..LP....LQQqqsqgHPL.QQQQMQQMQ......QQQQQQ
  706-  782 (75.93/18.63)	.........LQQQQQPQMVGTGmGQQQPQMVGT.G..MGQQ.....QPQMMV.....G..AG.MGQQYMQGHGRTVQQMM...Q.GKMAPQGP.....GSMpGAGSMPGGG..................................................................................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03169 with Med25 domain of Kingdom Viridiplantae
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