<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03168

Description Uncharacterized protein
SequenceMAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPYFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAVVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVPTQQPPMQQQQLQQQQNQLQQQNQLHQQHQLQPQNQLQQQHQLQQQLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGTGMGQQQPQMMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
Length840
PositionUnknown
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.459
Instability index56.12
Isoelectric point8.70
Molecular weight90496.36
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03168
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     116.93|      17|      17|     728|     744|       1
---------------------------------------------------------------------------
  647-  663 (27.62/ 6.43)	KPQ.VPTQQ.PPMQQQQLQ
  664-  678 (28.31/ 6.85)	QQQ.NQLQQ.Q..NQLHQQ
  737-  754 (33.57/10.01)	QQQ.QQIQQmQQMQQMQQQ
  755-  772 (27.43/ 6.32)	QQQpQQLQQ.QQQPQMVGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.00|      24|      24|     462|     485|       2
---------------------------------------------------------------------------
  449-  480 (33.50/12.20)	QLGQGgintnqnmISSLGTT............TVSSAPAM..MPTP
  481-  507 (26.57/ 8.00)	GMAQQ......avVNSLGVT............N.SSAMNMpiVQHP
  798-  834 (27.93/ 8.83)	GMGQQ.......yMQGHGRTvqqmmqgkmapqGPGSMPGA..GSMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.63|      30|     176|     508|     544|       3
---------------------------------------------------------------------------
  508-  544 (54.72/27.32)	NAQQQQQQQQQQQQQQPPPKYVKIwegtlsgQRQGQP
  685-  714 (56.91/18.25)	NQLQQQHQLQQQLQQQQLQQHMQL.......QTQGLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.62|      15|      24|     238|     258|       4
---------------------------------------------------------------------------
  238-  252 (29.28/12.04)	ALSRPLP...GNLVTNHP
  260-  277 (22.34/ 7.17)	ATSVPVPtsnGNPSVNGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     117.06|      23|      24|     304|     326|       5
---------------------------------------------------------------------------
  304-  326 (40.92/19.87)	PAFSHVTP..VAN....GVSQGLSSVQSP
  351-  376 (22.14/ 6.91)	PIQQSIRPggPAN...vSILNNLSQHRSV
  385-  402 (26.78/10.11)	PGI....P..M.S....GTGQSIGSQQVV
  405-  431 (27.22/10.41)	TAFGSNTP..ITGnsniAVSSSLGGIQSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.92|      19|      58|     715|     733|       6
---------------------------------------------------------------------------
  715-  733 (37.83/13.83)	LQQQQSQ..GHPLQQQQMQQM
  774-  794 (35.09/12.23)	MGQQQPQmvGTGMGQQQPQMM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03168 with Med25 domain of Kingdom Viridiplantae
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