<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03166

Description Uncharacterized protein
SequenceMDGGGGGNWRPTQGSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQIMMKQKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEAYQMVKNLKDQYFPELNDLYNKISLKLQHVDNMVPPQKPTEQYEKMKSFKLMLERTMHVLQLNKGNIQPALRDKIPAYERQIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQSQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRQSLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTGTSKKMKRDTSAMPLNVSSAGSVNDSLKQTFSIGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDAESFGATSEGTEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWENCVGA
Length1292
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.781
Instability index72.67
Isoelectric point9.37
Molecular weight142042.48
Publications

Function

Annotated function
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro
GO - Biological Process

Interaction

Binary Interactions

Repeat regions

Repeats

>MDP03166
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|    1138.29|     175|     177|     151|     325|       1
---------------------------------------------------------------------------
   10-  125 (118.85/18.13)	.............................................RPTQGSEARNR....IV...N.KIM.dtLKKHL.PV....S..........................VPEGLNELQK.....IAvrfEE.KIYTAATSQSDyLRKISLKMLSMETKT.QQN..PGN.AQVIQN.....QNPPGSV...PG...LP.....QgSNPT...QSSAIP....LMSQQQA....RQP
  151-  325 (321.19/61.54)	QNMSGMPQNTMNNGLAQGASQD.IYATQRQM............AGRQQQQQQSQNQ....LIYQQQ.QIM...MKQKLQQN....S..LMQQQSL.LQPTQMQSSQQPMMQ.IPSSLQPGQS.....IP...QT.QPMVQSSSQGG.IQQNALNSVPQSVQSLLQQ..PTQ.SAMRQQ.....QHSQSSMHPQPS...LQ.....Q.AQPT...QQPNIPLQHQLMGQQQN....LQQ
  326-  428 (127.11/19.90)	......................................................NQ....LIGQQNgAVD...MPQ..QQR....L..PVQSNNL.L...NMQQTQQMLNQ.........QS.....MP...SH.Q.............QQQLGS..QANISTLQQ..QQQ.QN.QQQ.....QQLLGTVPNVPN...IQrmhmlQ.TKAV...QQP....QQ.....QQH....AQQ
  429-  586 (208.35/37.33)	SSLGLMQPQSQHNQLQQ..SQ......QHLM............SQFQAQPNQLQQQ....LGMPQQ.P.P...MQQRLQTS....AgmLLQQNNI.DQQKQFMQAQRGLQE.VSSS....TS.....VD...STaQTGHTGTGTGD.WQEEAY....QMVKNLKDQyfPEL.NDLYNKislklQHVDNMVPPQ...............KPT...EQYEKMKSFKLM.........LER
  592-  759 (178.69/30.97)	Q.........LNKGNIQPALRDkIPAYERQIisilnsqkrprvQGQQTQFQQSAGQgptsNIPQQQ.Q.....PSQGLQQHdnhtN..QMPQASMpSMSTGLQSSGAAGIQhLPASPATNFG.....VP...AT.Q.............QNVTNA.PQATSNL..E..VTQgSNFNSL.....QH..GSM..SGA...LQ.....Q.GSTG........PMQGTLNAQQQAsssmLSH
  763-  908 (184.09/32.13)	GTMQANA.NSMQ.............ANANSL...............QQLKQQQQEH....HMMQSQ.Q.MkrqMFQQFQQK....Q..MLQQQ.L.PAQQQLQKQQQSQMQ.VPQH.HSGNDanelkVR...QG.AAM.....KPG.IYQQHLA...........Q....R.NNFYNQ.....QIKQGSAFPISSpqnLQ.....A.SSPQishHSPQVD.QHNLLPSQ.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.14|      23|      65|     931|     953|       2
---------------------------------------------------------------------------
  931-  953 (38.03/21.57)	APSPIPV.....DSEKP.......LSNLSSSLTNT
  964-  993 (28.32/14.04)	APQSQSI.....AVNTPgisasplLAEFTSVDGNQ
  994- 1021 (29.79/15.18)	ANMPTQVltkssAAERP.......LDRLLKALRTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.21|      12|      79|    1099|    1110|       5
---------------------------------------------------------------------------
 1099- 1110 (21.53/13.57)	AGSVNDSLKQTF
 1180- 1191 (20.68/12.73)	AVAVSPSLKSMF
---------------------------------------------------------------------------




Explaination for Stockholm format The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space.

#=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00)

#=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.

#=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.

Alignment of MDP03166 with Med15 domain of Kingdom Viridiplantae

Intrinsically Disordered Regions

IDR SequenceStartStop
1) PLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRT
2) QIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQSQSIAVNTP
3) QKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEA
4) RKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQ
981
612
205
67
1020
975
532
200

Molecular Recognition Features

MoRF SequenceStartStop
NANANA