<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03161
Description |
Mediator of RNA polymerase II transcription subunit 14 |
Sequence | MAGELGQQTVELGAVVRRAAEDSYLALRELVEKSRVEAEGKNGQQRSDTEKKIDLLKFIDRTRQRMLRLHVLAKWCQQVPLVHYCQQLASTLSSHETCFTQTADSLFFMHEGLQQARAPIFDVPSAIEVLHTGSYRRVPKCVEEIGTQNTLFQDEQKPTLKKLSTLVRAKLLEISLPKEISEVSVTDGIANVQVDGEFKVLITLGYRGHFSLWRILHMELLVGEKAGPIKLEEIRRYALGDDIERRMAVADNPFMILYTILHELCISLVMDTVIRQTNVLRQGRWKDAIKSELISDIGTGQGGSNAVMQLGQDGELDSSGSRIPGLKINYWLEEKNNASAESDSSPYIKIEAGQDMQIKCQHSSFVLDPFTDKEADLSIDLSCIDVEALILKAIACNRHTRLLEIQRELMKNVQMSQSPTEVILKREVHGEGFQKRVHRRDSNDCCTNEMLQVRAYGQSYIDLGINIRNGRFLLQSLGNILPPSAVLDSEEALNKGSTTATDVFVSLRTRSILHLFAATGSSLGLKVYSQSQVTLKIPKSILCGSEFMVMGFPQCANAYYLLMQLDKSFKPIQSNEGDNNNADATTDAKEAIRFIRIDINKLKIDEDVQIGNFFDKDKLLALQNVEDRPQRQSGADEPLPARPSFFSVVDEVFRCDRGSPITESQRLPPNSLPSSHSSYQVGLHGFSGGAGSPEQDYGSLQSNINAAKVTSGTGLNNYLLSNSKNAQSTSAFSGSVPAGLGNVSSSRSEGAYKKRSLSEFLQNIPSSKQSIIGDGPGKRRKLSEFMLDGLPLKANSPNMQPGTSLTYGKLLEELTAQMDSLNIPHVEEVGMPTSSSNLWLRLPFAHDASWKHICLHLGKAGSMSWDVRINDPHYGALWKLHGGSTTTEWGSGVRVANTSEVDSHISFDDDGVLLTYNTVEADSIQRLVSDLQRLSHARAFSCGMRRLIGVKLDGKLAEHQTAAETKLHSRRKASRDRLSEQMRKTFRIEAVGLMSLWFSYGAVPMVYFVVEWETGKSGCTMRVSPDQLWPHTKFLEDFVNGDEIASFLDCIRLTAGPLLALGGAIRPAKMPVTVPAGYSALPKQNNILTTAGSANSLSSSTMHNMSVPQGAAVAHSNSQLQTSSMLSVAGRTAPGLVPSSLLPFDVSVVLRGPYWIRIIYRNKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPNLLNARHTGPPLNASANTVSGNQQLASAPNRFGGAPGVARSTSTVANQVASSLSRAGNAMMPSGFASGIAGAPAHLSPGNVPAHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPDLLKEILGSVLKDNEGALLNLDHEQPALRFFVGGYVFAVSVHRVQLLLQVLNVKRFHHQQQQQQQTPQNNGQEELTVPEISEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFIKLIAWKKSLPQAHADNATTHRARIEICLEKHPRLVSDDYSASSSSSKSNIHHDRANNSVDFALTFVLDQALVPHMSISGGAAWLPYCVSVRVRYTFGEDSHIAFLAMDGSHSGRACWLQHEDWERCKQRVSRAVETMNGSAAVGDMSQGRLRMVAEMVQKQLQLSLLQLRDSPVSTGSAAS |
Length | 1649 |
Position | Tail |
Organism | Oryza barthii |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Oryzoideae> Oryzeae> Oryzinae> Oryza.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.231 |
Instability index | 50.89 |
Isoelectric point | 7.60 |
Molecular weight | 180989.93 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082
|
GO - Cellular Component | mediator complex GO:0016592 IEA:UniProtKB-UniRule
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:UniProtKB-UniRule
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP03161
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 138.60| 36| 169| 660| 700| 1
---------------------------------------------------------------------------
631- 660 (46.40/25.90) RQSGADEP..LPARP.SFFS.VVDEVFRCDRGSP.............
662- 699 (63.86/41.12) TESQRLPPnsLPSSH.SSYQ.VGLHGFSGGAGSPEQD.......YGS
842- 876 (28.35/11.03) ..........LPFAHdASWKhICLH..LGKAGSMSWDvrindphYGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.06| 15| 15| 1086| 1100| 2
---------------------------------------------------------------------------
1086- 1100 (23.76/17.35) NILTTAGSANSLSSS
1104- 1118 (26.30/20.26) NMSVPQGAAVAHSNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 94.18| 22| 23| 740| 762| 3
---------------------------------------------------------------------------
715- 733 (30.22/11.55) LNNYLLSN....SKNA...QSTSAFS
740- 761 (38.12/17.77) LGNVSSSR....SEGAYKKRSLSEFL
763- 786 (25.84/11.27) ..NIPSSKqsiiGDGPGKRRKLSEFM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 288.88| 102| 115| 180| 294| 4
---------------------------------------------------------------------------
180- 292 (154.64/113.19) ISEVSVTDGIAN..VQV..DGEfkvLITLGYR..G.HFSLWRILHMELLVGEKAGP.IKLEEirryalGDDIE...RRMAVADNPFMILYTILH.EL.CISlVMDTVIRQTNVLRQGRWKDaIKSE
294- 408 (134.24/80.40) ISDIGTGQGGSNavMQLgqDGE...LDSSGSRipGlKINYWLEEKNNASAESDSSPyIKIEA......GQDMQikcQHSSFVLDPFTDKEADLSiDLsCID.VEALILKAIACNRHTRLLE.IQRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 192.38| 58| 59| 1395| 1452| 5
---------------------------------------------------------------------------
1395- 1452 (99.71/75.93) LL.LQVLNVKRFHHQQQQQQQTPQNNGQEELTVPEISEICDYFSRRVASEPYDASRVAS
1456- 1514 (92.67/69.95) LLtLPISVLREFIKLIAWKKSLPQAHADNATTHRARIEICLEKHPRLVSDDYSASSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 321.03| 106| 146| 1121| 1228| 7
---------------------------------------------------------------------------
1121- 1185 (88.38/57.02) ...............................................................................QTSSM.....................................................................................................................................................................LSVAGRT......APGL..VPSSLLPFDVSVVLRGPY....WIRIIYRNkfSVDMRCFAGDQVWLQPATPPK
1186- 1330 (153.26/94.78) GGPSVGGSL.PCPQFRPFIMEHVAQGLNALEPNLLNARHTGPPLnasantvsgnqqlasapnrfggapgvarststvanQVASS.....................................................................................................................................................................LSRAGNAmmpsgfASGIagAPAHLSPGNVPAHMKGEL....NTAFIGLG....DDGGYGGG..WVPLAALKK
1334- 1377 (37.21/16.19) GILKYLGVLwLFAQLPDLLKEILGSVLKDNEGALLNLDHEQPAL.....................................................................................................................................................................................................................................................................................
1543- 1587 (42.17/20.06) ....................................................................................rffvggyvfavsvhrvqlllqvlnvkrfhhqqqqqqqtpqnngqeeltvpeiseicdyfsrrvasepydasrvasfitlltlpisvlrefikliawkkslpqahadnatthrarieiclekhprlvsddysasssssksnihhdrannsvdfaltfvldqalvphMSISG..........G.....AAWLPYCVSVRVRYTFgedsHIAFL.....AMD.GSHSGRACWLQ......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 39.64| 13| 163| 812| 831| 8
---------------------------------------------------------------------------
787- 803 (19.39/12.11) LDGLplkaNSPNMQP.GT
818- 831 (20.25/10.08) MDSL....NIPHVEEvGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 37.40| 12| 17| 892| 903| 10
---------------------------------------------------------------------------
892- 903 (21.05/15.72) GVRVA.NTSEVDS
911- 923 (16.35/10.30) GVLLTyNTVEADS
---------------------------------------------------------------------------
|