<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03160

Description Uncharacterized protein
SequenceMVSNLLGGKAFLSQEKQNIIVLAMEGSGGRDWRSQLQPEARGRITAKILESLNKKLGADFAKGLVDLQRVSARIEGRFFSISCTQSDYLRRLSLRMLKLETEPIQLGHQQAVDQSSESKVGQYPTSMLQQQTSCDQPSLCIQVDTKLQEMPPNEHLLDQVPPRSQKKLCMDDRLSDLPDTILHHIMSLLSAQEVARTCILSKRWKELSASAPCLDICVDKFGMDRVRFSEFVAHLLLSRAPNSLHTFRLHSFAIDHASSWINRAIELKAQVLEFTEYIRWEPFYLDPQLMAFASQYLKCLKLTNVTLDSNAFEPLNHACPALENLQLSQCFLEVPEICSASLKKLDIMECSLLMNLQIQTPRLVSLRFRCLQYKCSSCSRYPVITAAVTLCDLPNAENIDLSCSGRQVTFGREIQKFPMYGKLTSISLGEWCLSDKFSRLFCLLRHSPELKELTLKLEVERQDHNGEDEIRLMVGRSFSAENLKKICISTMQELSRKIARRQSWGMLSRFNKKDTAVSTITMPQEVKPEAMAYLVACTPIRSRSSLCKSHLGARLGGNTEIGLG
Length564
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.202
Instability index58.02
Isoelectric point8.61
Molecular weight63804.34
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03160
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.96|      19|      19|     312|     330|       1
---------------------------------------------------------------------------
  299-  318 (26.56/16.19)	CLKLTNVTLdSNAFEPLNHA
  319-  337 (34.40/23.15)	CPALENLQL.SQCFLEVPEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.51|      19|      19|      98|     116|       2
---------------------------------------------------------------------------
   98-  116 (32.78/22.53)	KLETEPIQLGHQQ.AVDQSS
  119-  138 (31.73/21.56)	KVGQYPTSMLQQQtSCDQPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.24|      16|      19|     260|     277|       6
---------------------------------------------------------------------------
  260-  277 (23.31/19.77)	WinRAIELKAQVLEF.TEY
  280-  296 (27.93/16.69)	W..EPFYLDPQLMAFaSQY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.80|      17|      26|     139|     157|       8
---------------------------------------------------------------------------
  139-  157 (27.31/20.79)	LCIqvDTKLQEMPPN..EHLL
  168-  186 (28.49/15.44)	LCM..DDRLSDLPDTilHHIM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03160 with Med15 domain of Kingdom Viridiplantae
Unable to open file!