<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03159

Description Uncharacterized protein
SequenceMEGSSSNNMAGQSLNWRTQISQEARNTIIEMTMEKLLEEFPVDFPGRMKMIQDNATNEEDKTYMVATSKADYVLRIALQMVNSKSKRNSNPLLPQDSSTPINLQQQHRVAGHMLDQGSSINTRNGSIDRISNLPNELLYAIMSTLPALELVYTGMLSTRWRHLWTSSAYLNIDVNQFGRHRGQKFCNFVNRMLRQRGSSLLDALRLHSADTRDASSWITYAIKRSSKVVEFSEDIDCEPFKLDYGVVDFTSICLKFLVLNNVCIDANVFYPINSSCPALENLELRDCSLENPQHRAPMIMTLPCLEVAIVILDEFFHSTDDLADMDEGEEQDGEEINHGIVSGLTKARSIELIAPLREDKFEMEIWTSPMFDNLISLTLGEWCMSNEFSPLLHFLWYSPLLEDLTLKLNMEVCEYCLQEPPTAPPLVKEFTADYLKKITIYFWLGDERVSKLLTLLAPICKSLEDIKLIPSTPPGVRAFVSRVQRIIK
Length488
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.205
Instability index48.09
Isoelectric point5.05
Molecular weight55629.20
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03159
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.45|      10|      49|     421|     430|       1
---------------------------------------------------------------------------
  421-  430 (19.85/12.18)	PTAPPLVKEF
  470-  479 (20.60/12.89)	PSTPPGVRAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.57|      44|      49|     218|     265|       2
---------------------------------------------------------------------------
  218-  265 (67.14/51.62)	ITYAIKRSSKVVEFSEDIDC..EPFKLDYGVVdFTSICLKFLVlnnVCID
  268-  313 (75.42/45.59)	VFYPINSSCPALENLELRDCslENPQHRAPMI.MTLPCLEVAI...VILD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.95|      11|      44|     355|     365|       4
---------------------------------------------------------------------------
  355-  365 (21.55/14.40)	PLRED...KFEMEI
  399-  412 (15.40/ 8.29)	PLLEDltlKLNMEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.18|      18|      18|      81|      98|       5
---------------------------------------------------------------------------
   81-   98 (30.92/19.30)	VN.SKSKRNSNPLLPQDSS
  101-  119 (28.26/17.09)	INlQQQHRVAGHMLDQGSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03159 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA