<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03159

Description Uncharacterized protein
SequenceMEGSSSNNMAGQSLNWRTQISQEARNTIIEMTMEKLLEEFPVDFPGRMKMIQDNATNEEDKTYMVATSKADYVLRIALQMVNSKSKRNSNPLLPQDSSTPINLQQQHRVAGHMLDQGSSINTRNGSIDRISNLPNELLYAIMSTLPALELVYTGMLSTRWRHLWTSSAYLNIDVNQFGRHRGQKFCNFVNRMLRQRGSSLLDALRLHSADTRDASSWITYAIKRSSKVVEFSEDIDCEPFKLDYGVVDFTSICLKFLVLNNVCIDANVFYPINSSCPALENLELRDCSLENPQHRAPMIMTLPCLEVAIVILDEFFHSTDDLADMDEGEEQDGEEINHGIVSGLTKARSIELIAPLREDKFEMEIWTSPMFDNLISLTLGEWCMSNEFSPLLHFLWYSPLLEDLTLKLNMEVCEYCLQEPPTAPPLVKEFTADYLKKITIYFWLGDERVSKLLTLLAPICKSLEDIKLIPSTPPGVRAFVSRVQRIIK
Length488
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.205
Instability index48.09
Isoelectric point5.05
Molecular weight55629.20
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03159
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.45|      10|      49|     421|     430|       1
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  421-  430 (19.85/12.18)	PTAPPLVKEF
  470-  479 (20.60/12.89)	PSTPPGVRAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.57|      44|      49|     218|     265|       2
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  218-  265 (67.14/51.62)	ITYAIKRSSKVVEFSEDIDC..EPFKLDYGVVdFTSICLKFLVlnnVCID
  268-  313 (75.42/45.59)	VFYPINSSCPALENLELRDCslENPQHRAPMI.MTLPCLEVAI...VILD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.95|      11|      44|     355|     365|       4
---------------------------------------------------------------------------
  355-  365 (21.55/14.40)	PLRED...KFEMEI
  399-  412 (15.40/ 8.29)	PLLEDltlKLNMEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.18|      18|      18|      81|      98|       5
---------------------------------------------------------------------------
   81-   98 (30.92/19.30)	VN.SKSKRNSNPLLPQDSS
  101-  119 (28.26/17.09)	INlQQQHRVAGHMLDQGSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03159 with Med15 domain of Kingdom Viridiplantae
Unable to open file!