<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03155

Description Uncharacterized protein
SequenceMEAGPNRDKITKSIDDALQLSKIYGFSGIDNGQVIIFFMMFVITKLIDCTLEDCGFPSGLTEEQGSIYAIEGPQDMDLDVKGVSTEKQNEHRAQLRRKNTVMALDVLIMMVADRKIQSFLRLIFLNMPEKFSVLSQRLSLVEAHKMELETLLTANHKIDDLLMNMRRVSNTAYQPNNKRLLGVLGNMKYGGSMLGQFTGAGRAACWVIFDIYVENAIDGKHLSAISAIEVLKEMTKTLQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDSRLCMLLALIPLSIGAILKEETDVHGAQGSKSLPKTSGLVSSLQDLIQYSGLLVPPSSVVNAANAAASKAAAFKANYKSGGGNPGMMGQNDSSTKTVGNMLHLIVEACISRNLIDTSSYLWPSYVVSSGHLKDATLPQESPWLNFMQGAPLSGPLIDALIATPASSTTELDRLYHIALNGSEEEKSAAAKILCGASFVCGWNIQEYVVRMVVKLLSPPLPSNSSTQGSMSHYLAQMSTLNALLLGISYGDAIHIISLYGMVPDVAAALMPICEVFGSIPPPSNHKPAIVGEISVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMRNNHIDFANSSASSRNSSNNIGPLNEVPAQPLYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILSMICRKMNKPVVSSGNLSSTSSSSVSGSSVSTPDDYQRPTVPAWEFLEAVPFVLEAVLTACAHGRFSSRDLTTSLRDLVDFLPASIAAIVSYFLAEITRGIWKMVPMNGTEWPSPGASLHSIEAEIKEILASAGIQIPSCYPRGVPPMLPLPMAALVSLTITFKLDKSSEYIHAISGQALENCAGGSSWPSMPIIAALWTQKVRRWHDFIILSCLRSPFGRDKDAVAQLIQSCFSSFLRSSCSGSDFTANRGVGALMGDAITGQGLQLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWADKLANGFSSSGPPQLKSGRTPLSSAACMAHQVAMLGGGLLCVAGGPLLVQVLYEETLPTLLLSAREESMKDPGPVSSTLQGYAMANMLFFCGSLLWGAERTSPVMKLSFLSRRPRVVGNHMDFMAGVLDGHILLGCDHGTWKAYVSRFVFLVVKFVPSWLRDIKLDTLKKIASGLRSWNEHDLALALLERGGPQAISTVVDTLL
Length1192
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.127
Instability index48.34
Isoelectric point7.50
Molecular weight129681.82
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03155
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     344.74|     114|     152|     678|     803|       2
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  678-  803 (172.00/123.93)	PVHQVAnkILSM.ICRKMNKPVVSSGNLSSTSSSSVSGSSvSTPddyQRPTVPA.WefLEAVPFVLEAVLTACAHGRFS.SRDLTTSLRD..LVDFLPASIAAivSYFLAeiTRGIWKM....VPMNGTEWP.SPG
  837-  960 (172.74/94.79)	PLPMAA..LVSLtITFKLDKSSEYIHAISGQALENCAGGS.SWP...SMPIIAAlW..TQKVRRWHDFIILSCLRSPFGrDKDAVAQLIQscFSSFLRSSCSG..SDFTA..NRGVGALmgdaITGQGLQLPmAPG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     139.74|      40|     506|     571|     622|       3
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  571-  612 (65.20/51.61)	YSVFSCAFlCLLRLWKFyKPPQEYCLAGRGGSVRLELTLDYL
  645-  667 (34.22/26.67)	QPLYIDSF.PKLRAWYF..QNQA.CIA...............
 1163- 1191 (40.33/22.17)	...........LRSWN..EHDLALALLERGGPQAISTVVDTL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.56|      47|     593|     385|     432|       5
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  385-  432 (81.89/48.44)	ISRNLIDTSSYLWPSYvVSSG..HLKDATLPQESPWLNFMQGAPLSGPLI
  980- 1028 (76.67/41.42)	ILKQVIEWADKLANGF.SSSGppQLKSGRTPLSSAACMAHQVAMLGGGLL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.13|      35|     166|     161|     196|       6
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  161-  196 (59.15/38.89)	LLMNMRRVSNTAYQPNNKrLLGVLGNMKYGG...SMLGQ
  328-  365 (54.98/31.58)	LLVPPSSVVNAANAAASK.AAAFKANYKSGGgnpGMMGQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03155 with Med33 domain of Kingdom Viridiplantae
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