<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03154

Description Uncharacterized protein
SequenceMGGRKSGSNGFAIWASINGTCAIPGVSLSSRHPATTAPIRSTALIRIEIEAEGEAVKHAADLLGEMQRYAGAGNNSGFSGGGGAGGGGRDSSRLDGSPYSANNYPLSSRRQQQLAPYKLKCDKEPLNNKLGPPDYYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIPYFCKTDIVVKCKEALKKRLRAINDSRAQKRKAGQVYGVPLFGSLLIKPGVYPEQRPCNEDTRRKWAEALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSTSAGGSDNHRSNQWTNDVVEYLQQLLDEFCLKEVHPSFREQSSPGLIAGVTQVKMKSEAPPAVGDIDEPLVHFKWWYMVRLIQWHLAEELLVPSERVAVEALELLMPVALGMIDIITLSQTYVRMFVEILVRRLSDGPVVDNPKRAHISSVIAEVLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKITAGGGIAGSKRQDGYRYLSCGYAVCSIQKRSYDLATVANPNFQARGAAKVVQALDKALVTGNLTMAYLSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVESSLICSVFFLCEWATCDYRDCRTSLLRNVKFTGRRDLSQVHLAVSILKNKMDEINNLSRSKSSSCIAVNNTAKGSSLNNTSLAATVSDSSGLRNNTKSVDEKDKKDIFESPGPLHDIIVCWLDQHEVNSAVGFKRVDVLIIELIRSGIFYPQAYVRQLIISGITDKNDTLLDVERKRRHRRILKQLPGSSLFEILEEDRITEEQHLYEMMSTYSSERRLVLSELSTGQAFDANSRGEYASSSCVPKASDLFLASGGDKHGRVPEQVEDVKALVSSMLRFINPHSVEEEHCQIKTNPQGSSASTVTQVDTVDVKHDCEDCARTKRQKLDERASPLQGFPLIQSDEEDIWWVRKGTKLHESLKAEPAQKPIKQNSRGRAKVVRKTQSLAQLASSRIEGSQGASTSHLCESKVGCSHHKPSIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSVWLLKSVRQLIEVNEMAASKASNSISSFSSQSDDKTLLKWRLGDEELLSILYILDICCDLVSGARFLVWLLTKVRGGMATSGQTGRSATHIKNRENQVCQIGEALVFSSLLRYENILLSTDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARWEKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQIRQKMNVRNSRIVPNMKDIIQRQTEEKKGITAPKSPSVDREDSYQIAHDIVLGLLECIRQNGGASLDGDPSIVASAVSAIVLNAGHTIAKHLDLSAGNYHGVSSMGSSLSSIRHILHVHISSLCLLKDALGDRFSRVFEIALAVEASSAITATFAPPKMQRNQFQPSPETHDVYGNHTNDLSNTGKGFVGRTTKVAAAISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRGLRSSTNGVSRSTGTFKMENSVEVLVHWFRILLGNCRTVYDGLIADILGESYVLALSRLQRMLPLSMVLPPAYSIFAMVLWKRYTFSREDVQLYQSLSNAINDITMHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLEMHNPDKGSKAMAFIPLRARLFLNSLVDCKTAGAILGDGSCASESGEAKESELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAESFALSDSEKGFTEIILSRLLARPDAAPLYSELVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWASLLSDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKANPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLSARIIYEDADLPLPPTNTTVLRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFDSEAAEGLQSALDHLEMPGIIRRRIQAAMPVLPPSRHPCISCQPPQLSLAALSPLQSGTSTSGPQQKGNSTSWVPTNVSIRNKAAFATQDPEMEVDPWTLLEDGTSCPSMSSGSNSSSGMAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2254
PositionKinase
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.242
Instability index50.14
Isoelectric point8.62
Molecular weight248386.67
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03154
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.60|      36|      77|       2|      38|       1
---------------------------------------------------------------------------
    2-   38 (59.81/42.49)	GGRKSGSNGFAIwASINGT.CAIPGVSLSSRHPATTAP
   80-  116 (60.79/37.10)	GGGGAGGGGRDS.SRLDGSpYSANNYPLSSRRQQQLAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.81|      38|      80|    1509|    1547|       6
---------------------------------------------------------------------------
 1509- 1547 (63.93/47.20)	MENSV.EVLVHW.FR.ILLGNCRTVYDGLIADIlGESYVLAL
 1588- 1628 (55.88/36.23)	LSNAInDITMHQpFRdICFRNTHQLYDLLAADV.GDSEFAAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.03|      28|     305|     724|     754|       7
---------------------------------------------------------------------------
  724-  754 (41.00/44.90)	SAVG..FKRVDVLiiELiRSGIFYPQAYVRQLI
 1031- 1060 (43.03/33.02)	SEVGksLKRLRLL..ER.RSVSVWLLKSVRQLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.89|      39|      82|    1211|    1250|       8
---------------------------------------------------------------------------
  794-  839 (20.98/ 7.02)	..........RITEEQHLyemmstysserrlvLSE...LSTGQAFDansrGE.YASSSCV..
 1211- 1250 (65.34/45.14)	PSVARwEKSFRTTCDQRL..............LAE...LDNGRSVD....GD.LVSSSGVSA
 1293- 1336 (51.57/29.33)	PSVDR.EDSYQIAHDIVL.............gLLEcirQNGGASLD....GDpSIVASAVSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.99|      38|      63|    1830|    1871|      10
---------------------------------------------------------------------------
 1830- 1871 (55.63/47.76)	LLSDVIASKSTkrklEVTSIEEGEVVDDSADAKRPSKANPHN
 1894- 1931 (64.36/44.92)	LMLPCIDRSSA....EFRSIFAGDLVKQMGTISEHIKAIARN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.05|      29|      58|    2153|    2181|      24
---------------------------------------------------------------------------
 2153- 2181 (51.13/27.52)	SPLQSGTSTSGPQQKGNSTSWVPTNVSIR
 2212- 2240 (50.92/27.38)	SGSNSSSGMAGDHGNLKACSWLKGAVRVR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03154 with Med12 domain of Kingdom Viridiplantae
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