<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03153

Description Uncharacterized protein
SequenceMGGRKSGSNGFAIWASINGTCAIPGVSLSSRHPATTAPIRSTALIRIEIEAEGEAVKHAADLLGEMQRYAGAGNNSGFSGGGGAGGGGRDSSRLDGSPYSANNYPLSSRRQQQLAPYKLKCDKEPLNNKLGPPDYYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIPYFCKTDIVVKCKEALKKRLRAINDSRAQKRKALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSTSAGGSDNHRSNQWTNDVVEYLQQLLDEFCLKEVHPSFREQSSPGLIAGVTQVKMKSEAPPAVGDIDEPLVHFKWWYMVRLIQWHLAEELLVPSERVAVEALELLMPVALGMIDIITLSQTYVRMFVEILVRRLSDGPVVDNPKRAHISSVIAEVLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKITAGGGIAGSKRQDGYRYLSCGYAVCSIQKRSYDLATVANPNFQARGAAKVVQALDKALVTGNLTMAYLSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVESSLICSVFFLCEWATCDYRDCRTSLLRNVKFTGRRDLSQVHLAVSILKNKMDEINNLSRSKSSSCIAVNNTAKGSSLNNTSLAATVSDSSGLRNNTKSVDEKDKKDIFESPGPLHDIIVCWLDQHEVNSAVGFKRVDVLIIELIRSGIFYPQAYVRQLIISGITDKNDTLLDVERKRRHRRILKQLPGSSLFEILEEDRITEEQHLYEMMSTYSSERRLVLSELSTGQAFDANSRGEYASSSCVPKASDLFLASGGDKHGRVPEQVEDVKALVSSMLRFINPHSVEEEHCQIKTNPQGSSASTVTQVDTVDVKHDCEDCARTKRQKLDERASPLQGFPLIQSDEEDIWWVRKGTKLHESLKAEPAQKPIKQNSRGRAKVVRKTQSLAQLASSRIEGSQGASTSHLCESKVGCSHHKPSIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSSDDKTLLKWRLGDEELLSILYILDICCDLVSGARFLVWLLTKVRGGMATSGQTGRSATHIKNRENQVCQIGEALVFSSLLRYENILLSTDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARWEKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQIRQKMNVRNSRIVPNMKDIIQRQTEEKKGITAPKSPSVDREDSYQIAHDIVLGLLECIRQNGGASLDGDPSIVASAVSAIVLNAGHTIAKHLDLSADALGDRFSRVFEIALAVEASSAITATFAPPKMQRNQFQPSPETHDVYGNHTNDLSNTGKGFVGRTTKVAAAISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRGLRSSTNGVSRSTGTFKMENSVEVLVHWFRILLGNCRTVYDGLIADILGESYVLALSRLQRMLPLSMVLPPAYSIFAMVLWKRYTFSREDVQLYQSLSNAINDITMHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLEMHNPDKGSKAMAFIPLRARLFLNSLVDCKTAGAILGDGSCASESGEAKESELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAESFALSDSEKGFTEIILSRLLARPDAAPLYSELVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWASLLSDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKANPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLSARIIYEDADLPLPPTNTTVLRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFDSEAAEGLQSALDHLEMPGIIRRRIQAAMPVLPPSRHPCISCQPPQLSLAALSPLQSGTSTSGPQQKGNSTSWVPTNVSIRNKAAFATQDPEMEVDPWTLLEDGTSCPSMSSGSNSSSGMAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2156
PositionKinase
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.249
Instability index49.84
Isoelectric point8.51
Molecular weight237620.42
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03153
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.81|      38|      80|    1411|    1449|       1
---------------------------------------------------------------------------
 1411- 1449 (63.93/43.37)	MENSV.EVLVHW.FR.ILLGNCRTVYDGLIADIlGESYVLAL
 1490- 1530 (55.88/33.29)	LSNAInDITMHQpFRdICFRNTHQLYDLLAADV.GDSEFAAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.60|      36|      77|       2|      38|       2
---------------------------------------------------------------------------
    2-   38 (59.81/43.24)	GGRKSGSNGFAIwASINGT.CAIPGVSLSSRHPATTAP
   80-  116 (60.79/37.77)	GGGGAGGGGRDS.SRLDGSpYSANNYPLSSRRQQQLAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.85|      30|      81|    1144|    1174|       3
---------------------------------------------------------------------------
 1144- 1174 (50.76/41.89)	PSVARwEKSFRTTCDQRL.LAE...LDNGRSVDGD
 1226- 1259 (45.09/30.02)	PSVDR.EDSYQIAHDIVLgLLEcirQNGGASLDGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.06|      43|     671|    1175|    1220|       8
---------------------------------------------------------------------------
 1175- 1220 (61.30/70.16)	LVSSSGvSAGEEIDEQIRQkmNVRNSRIVPNMKDIIQRQTEEKKGI
 1816- 1858 (69.75/63.65)	LVKQMG.TISEHIKAIARN..GTKQSGLVPSGTEAASNKSSSRKGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     233.92|      86|     859|     415|     518|       9
---------------------------------------------------------------------------
  415-  518 (114.23/135.11)	SVIAEVLRYMVLAVPDTFVS.LDcfpLPSFVVPDVYSR..GALLKITAGGGI....AGSKRQ...........DGYrylscGyavcsiqKRSYDLATVANpNFQARgAAKVVQALdKALVTG
 1261- 1364 (119.69/84.11)	SIVASAVSAIVLNAGHTIAKhLD...LSADALGDRFSRvfEIALAVEASSAItatfAPPKMQrnqfqpspethDVY.....G.......NHTNDLSNTGK.GFVGR.TTKVAAAI.SALVVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.98|      60|     637|    1051|    1125|      12
---------------------------------------------------------------------------
 1064- 1125 (94.79/85.84)	GQ...TGRSAT.....HIKNRE..NQVCQIGEALVFSSLLryENILLSTDLLPEVLSASMSRNFVL...ATARQP
 1694- 1766 (81.18/44.31)	GQdalLGRKSTrqqlvHIAQRKglSTKTQVWKPWGWASLL..SDVIASKSTKRKLEVTSIEEGEVVddsADAKRP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03153 with Med12 domain of Kingdom Viridiplantae
Unable to open file!