<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03152

Description Uncharacterized protein
SequenceMQSEATLLELLRRLQQLELTVDTLTVTEIGKAVSSYRKHNSKQIRHLVRLLIEGWKRIVDEWMSSRDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSIRLSELPLSFPQENQGSKFFDGMDDDGNTRSNGGRDNGRLYTRNQEPARRPLPPVAQQYDPDQSWKQEQSAMRQSRPQELSNGQTREQFIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSDKPASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRNWQPNGRPRNNSNFNNNRNWSR
Length326
PositionUnknown
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-1.178
Instability index64.06
Isoelectric point9.59
Molecular weight37117.78
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03152
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.87|      17|      17|     202|     218|       1
---------------------------------------------------------------------------
  169-  194 (21.96/ 7.48)	QSWKqeqsamrqsRPQELSNGQTREQ
  198-  214 (29.11/12.02)	AMLA.........RPSNPESGPGRPQ
  215-  231 (27.80/11.19)	PRTK.........QHQDASPAQGRSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.56|      20|     154|     102|     157|       3
---------------------------------------------------------------------------
   81-  100 (35.11/33.53)	GLEQDERGLSSPSMDEGALF
  128-  147 (37.45/15.27)	GMDDDGNTRSNGGRDNGRLY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03152 with Med26 domain of Kingdom Viridiplantae
Unable to open file!