<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03148

Description Uncharacterized protein
SequenceMAAPSAAAAWVDWAAEYTKAAQAESRPPAEWAARVASVVAAAGDAPWSPGLAEMLARALLYGGGGAAWKYAEAALAAGLASPALLLAILSTRVIPHRFTRPTVYRLYLELLRRHGFNFAFQMKAANFKKIMQLIDDNLGLSKIFGFSTCEPGLVDAALDDEGLLELIPDKKAHWPTRSDDVSAFDGTFSEQRIDKIDKLQKMNNVITIELIGHLLHDKVITNILSLARENMQSQCAAFTNRLQLLITKSSTLQTSTVALEAFQQLNLDVCNIFRENKHWLRRKFHPIVTSNPLSSPNGRCLGASYSAQWIPIDMYLEDCLDGSIAATNSIEILSGLIKALQAVNRATWHDAFLALWIASLRLVQREREPIEGPVPHLDTRVCMLLSITTLAIVDIIEESDSEMNSNWKEKRTSDDLRKELMLSLQTLGDYESLLVPPPCIISVANQAASKAAMFVSGTNISSGYMENVNDRTTNYSGNMWHLIVESCISRNLLETSVYYWPGYINGHVNSITHALPSQLAAWSSFMKRAPLTQSLVNVLVATPAPSLAEVQKLYEVAVDGSDEDKVSAATILCGATLLRGWNFQEHTVRLVVKLLSSSDPIDFSGGESQLVKHGPMLNVIVTGISPVDYVPIFSFHGLIPELAAALMAICEVFGSLSPSVSWSPRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVVSIRSSAKNRNTQKQLPVTSNPSSEHPIFMDSFPKLKLWYRQHQACLASTLSGFAHGAPVHKNVDSLLNLMFRKANKESTSIGSLSGSSSISNSSGPGVDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLTDFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLVTGGSTLGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMPIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVFQLLRSCFTATLGMSSTTSVCSCGGIASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLLMLSVKDIAETTVSRHRSDKVRKTKYVMRHGQVSLSSAMTQVKVAASLGATLVWLSGGTALVQSLFQEMLPSWFLSVQDLGRGGAASGGTVYKLGGHALAYLAVYAGMFAWGIDPTPVSRRRERVMWSHFEFLASALDGKISLGCDLSLWRAYVSGFLGLVVECTPCWAHEVDLRVLRRLSAGLRQWKEDELAVALLRRAGPEAMAAAAELIIGGDW
Length1304
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.126
Instability index41.04
Isoelectric point6.92
Molecular weight142147.10
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03148
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     192.24|      63|      72|     690|     761|       1
---------------------------------------------------------------------------
  690-  761 (102.17/84.12)	NHpplEYCVMG..DGAPVGSQLTP..EYLLLLrnsqvvSIRSSAKNRNTQKQLPVTSNPS.SEHPIFMDS..FPKLKLW
  764-  833 (90.07/55.38)	QH...QACLAStlSGFAHGAPVHKnvDSLLNL......MFRKANKESTSIGSLSGSSSISnSSGPGVDDShlWPQLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     389.32|     184|     433|     418|     633|       2
---------------------------------------------------------------------------
  418-  509 (39.15/67.32)	......................................................................................................................................................................................................................................................................................................................................................................KELMLSLQTLGDY..ESLlvppPCIISV....ANQAASKAAmFVSGTNISSgymEnvndrTTNYSgnmwhlIVESCISRNLLETSVYYwPGYINGHVN
  510-  633 (140.64/110.05)	SITHALPSqlaAWSSFMKRA.PltqSLVNVLVATPAPSLAEVQKLYEVAVD.GSDEDKVSAATilcgaTLLRGWN...FQEHTVRLVVKL.LSSSDPIDFSGGESQLVKHGpMLNVIVTGISPVD....YVPIF..................................................................................................................................................................................................................................................................................................................................
  858-  935 (61.63/29.72)	......................................................................................................................................sfhglipelaaalmaicevfgslspsvswsprtgeeisahtvfsnafilllrlwkfnhppleycvmgdgapvgsqltpeyllllrnsqvvsirssaknrntqkqlpvtsnpssehpifmdsfpklklwyrqhqaclastlsgfahgapvhknvdsllnlmfrkankestsigslsgsssisnssgpgvddshlwpqlpaweileavpfvvdaaltacshgrlfpRELATGLKDLTDFlpASL....ATIVSYfsaeVTRGVWKPA.FMNGTDWPS...P.....AANLS......MVEEHIKKIVAATGVDV.PRLVTGGST
  950- 1071 (147.89/85.71)	TITYKLDK...ASERFLNLAgP...ALENLAASCPWPSMPIVAALWTQKVKrWSDFLVFSASR.....TVFHHNNdavFQLLRSCFTATLgMSSTTSVCSCGGIASLLGHG.FGSHCSGGLSPVApgilYLRIF..................................................................................................................................................................................................................................................................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.57|      23|    1108|      47|      87|       4
---------------------------------------------------------------------------
   64-   87 (35.10/49.45)	GGAAWKYAEAALAAgLASPALLLA
 1175- 1197 (42.47/15.97)	GGTVYKLGGHALAY.LAVYAGMFA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.33|      14|      15|       2|      15|       7
---------------------------------------------------------------------------
    2-   15 (25.78/12.53)	AAPSAAAAWVDWAA
   20-   33 (25.55/12.35)	AAQAESRPPAEWAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03148 with Med33 domain of Kingdom Viridiplantae
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