<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03138

Description Uncharacterized protein
SequenceMAAVKASAARGDPPLLQAAEAARCAREASSSISVDGGAGAALAAALVSNLCFAHNTGAMWKVLDQAMASRLVSPLLALALLTPRVVPNRQAQPEAYRLYLELLGQYTVAPVCTESVETKAMLVKSIDDALHLSDSYGFQRMDFGHTVILFVLSVIKILTDCILEDCGLPTIDGDGHDISYAIGAEKSMNIDGKGSSFDRKDEHREYLRRKNTIMTLEVVEKITANKNTQVFLRLVYRNTPENFNILLQRLQLIGALKSKNFGTAHNLLGSLMMNIRKVVTTGHQLHKGNLLGSIVSTKPCSSAARSVFGAGKSSCWIPFDMFMENTMDGRHLDTISSIEALTELAKTLQVLNRATWQETFQALWISALRLIQRDRGIPEGPFPHLHSRLCMLLAIVPLSIASILKEESDKIEGGMVSVRRGELLSSLQVLGQFFGLLSPPPAVVQSANIAARKALVALSILKDRNERGHNYSKDISSIKAVKDASAVEESPWSALMEGSPLMGLKDALMVTPASSLAELEKLQPFAVSGSDEEKLAASKILCGASLLRGWNIQEHVIQMVLKLLSTLLPLDSGSDGFYIHHMPMLHALISGISSIDVVHILSMYGLVPELAAILMPLCEIFGSLPSSDHRNCSFEEASVYSVFSCAFLCLLRLWKFHRPPVEYALSKHGVFVCSEISLDFLLLLRNSHFALNSPYDVSRKSIFQLDPSFQKPVYIDSFPKLRAWYFQNQACIASTLSSSYKRKSILQVANKILKIVCHKMSKSGIPPVSSQSTSSSSMSGSSLGTQDDVSQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLITGLRNLADFLPASVAVIVSYFSAEITRGLWKPVMLNGTDWPSPAATLLAVESDIEEALASAGVHINISPRTRPPIPMLPLPIATLISLSITVKMEEFNHLQGIIDKGVEICATSSSWPSMAIIGAFWAQKVRRWHDYIIQSCSETPFTRDKNAVAQLIRSCFSSFLGPLVDGRSCFVADRGVNRLLGQAHQERSPRFSLSPGLLYTRCCRMFPDNYFVCEEILKVVIERARALANECDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLCHAGGMKLVRLLYEQILPTMLLSAGEARLGSAGPVCSSFEGFALAYVLLVSGASTWGVGETSPVYTSVYTSKRQRVVDRHLEFVANVMQGNIELGCGQVTWRTYVICFVGLLVDFAPTWIPEVKLETLKKLASGLWKWHECDLALSLLERGGPKAISTVVEYIL
Length1260
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy0.168
Instability index48.10
Isoelectric point8.08
Molecular weight137682.27
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03138
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     377.67|     145|     374|     612|     877|       1
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  612-  703 (108.97/53.76)	.......................................................................................................AILMPLCeiFGSL..PSSDHRNCSFEEASVYSVFSCAFlcLLRLWKFH.RPPVEYA....LSKHGVFVCSEIsldfLLLLRNSHFALNSPYDVSRKSIF
  808-  870 (62.68/172.11)	LETVLA.ACAHGRLS..SRDLITGL.RNLADFLPASVAVIVSYFS...AEITRGLwkPVMLNGTDWPSPA....................................................................................................................................
  880- 1071 (206.02/97.32)	IEEALAsAGVHINISprTRPPIPMLpLPIATLISLSITVKMEEFNhlqGIIDKGV..EICATSSSWPSMAiigafwaqkvrrwhdyiiqscsetpftrdknavAQLIRSC..FSSFlgPLVDGRSCFVADRGVNRLLGQAH..QERSPRFSlSPGLLYTrccrMFPDNYFVCEEI....LKVVIERARALANECDSSRPHLL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.59|      30|      83|     440|     469|       7
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  440-  469 (50.61/36.45)	PPAVVQS..ANIAARKALVALSILKDRNERGH
  524-  555 (48.98/34.99)	PFAVSGSdeEKLAASKILCGASLLRGWNIQEH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.17|      14|      16|     210|     223|       9
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  210-  223 (22.90/16.64)	KNTIMTLEVVEKIT
  226-  239 (24.27/18.07)	KNTQVFLRLVYRNT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.04|      20|     685|     413|     438|      10
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  413-  438 (21.67/27.44)	GGMVSVRrgeLLSSlQVLGQFfgLLS
 1100- 1119 (37.37/19.93)	GGMKLVR...LLYE.QILPTM..LLS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.90|      29|      62|    1121|    1152|      15
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 1121- 1152 (43.18/37.05)	GEARLGsAGPVcsSFEGFALAYV.LLVSGASTW
 1186- 1215 (53.72/33.16)	GNIELG.CGQV..TWRTYVICFVgLLVDFAPTW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03138 with Med33 domain of Kingdom Viridiplantae
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