<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03132

Description Uncharacterized protein
SequenceMEGAAAAHPAASSVSAAAHWMATEDPGLRSNIINNMVKKFMTITNSQHDHHYREIQNYAVRCEQDALNRTTNKEDYLRNIAQRILNMEMKVRRSQSLQAGTTPSAQRPSSQQQNVCIMPQNPGQVPDQHRASAPNSQIEASQEQTVMVAAPDRYLNFNTTAISPVAMHVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNPVLGQNASGSGTQQRQLAETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPGVQNNQQNVGVLCQPMTPPQCQVATAQQSSLGCHSPQTSEPMVIAGEVDWREEIFQKIKSFKDAFLSEVLEYDRMVQVPKLTEEQLRSLPVENAEKLRRIRQVKKIIAMMLDLLNTQKSNVHKGMQNIFPIFQQYLGQLRLSISKSKARNTVAKTGCQSQNCSENSQIVNLAGNTAPFTCDASRQQKQQEQVTNAKTSRMEQTIMTRTPTPQQESHGCHLLGVPSPCFSPEALQPSSTNTVEECFTPFPVTKTVQPVKVASPHVASLSASVKSSVPKPGVARVVSPSASEKSRLASSPSRPEGAHAASPSSTSVESTLPTPIAKPGTVRAASPCTPVKSTSQSPVTKPGVAEVDSRRACVTSKLKSPVGKPETTGAASPCASVKSKVSLDVDSVTEFLQHRVVAPAAANGSSNQAIPSLVSAAPPKAAHQAEDQVHDEAEKIEAKRPISRLIETLLSSSPEALRHSANSMRLAIWEADRIPAPSPLPYRPRNGKMKRDFDHVTSRPVSSPLSSTDESCMTSECAAFEDESSGEYTAKRQKTQVNANDALVHEIKTINNKLVDTVISIADENGTDEIIYQNGGGTLIKLSYNAISLSPSLKSLFAASEMTIVMPVKLLVPADYPKSSPILVDNDDEQRRLSDISHAVAMAFGRAVRELPEPRSIEATAMAWDGCVRRAVTEVAHRHGGGTFSSRRNQWRAVQLHGPMIGSGAGSPTES
Length997
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.555
Instability index61.63
Isoelectric point9.01
Molecular weight108521.03
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03132
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     271.05|      45|      45|     594|     638|       1
---------------------------------------------------------------------------
  481-  520 (56.70/26.69)	.EQTI.MTRTPTP.QQESHGCHLLGV.....PSPCFSPEAL.QPSSTNT
  521-  568 (57.77/27.35)	VEECFtPFPVTKTvQPVKVASPHVASLSASvKSSVPKPGVA.RVVSPSA
  570-  592 (33.80/12.72)	EKSRL.............ASSPSRPEGAHA.ASP............SST
  594-  638 (79.80/40.78)	VESTL.PTPIAKP.GTVRAASPCTPVKSTS.QSPVTKPGVA.EVDSRRA
  640-  673 (42.97/18.32)	VTSKL.KSPVGKP.ETTGAASPCASVKSK..........VSlDVDS...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.18|      24|      25|     183|     206|       2
---------------------------------------------------------------------------
  183-  206 (41.87/22.47)	QAKQLHPTNV.VGYNPTSLNQIQGQ
  211-  232 (35.55/17.92)	QNFQQNP..V.LGQNASGSGTQQRQ
  244-  264 (29.10/13.28)	RMKQQHMRGN.QQQNFTQRNQI...
  266-  287 (23.66/ 9.37)	PAQQAHLGKMqIGH.PGVQNNQQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     184.43|      48|      62|     701|     762|       3
---------------------------------------------------------------------------
  701-  749 (71.17/41.26)	SAAP..PKAAHQAEDQVHDEAEKIEAKrPISRLIETLLSSSPEALRHSANS
  764-  812 (70.41/57.95)	SPLPyrPRNGKMKRDFDHVTSRPVSS..PLSSTDESCMTSECAAFEDESSG
  815-  850 (42.85/16.27)	TAKR..QKTQVNANDALVHEIKTINNK.....LVDTVISIADE........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.66|      22|      47|      24|      47|       4
---------------------------------------------------------------------------
   24-   47 (30.06/31.81)	EDpGLRsNIINNMVKKFMTITNSQ
   74-   95 (38.60/27.68)	ED.YLR.NIAQRILNMEMKVRRSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.56|      11|      28|     110|     122|       5
---------------------------------------------------------------------------
  110-  122 (17.62/16.97)	SQQQNVciMPQNP
  141-  151 (19.94/10.34)	SQEQTV..MVAAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03132 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FNTTAISPVAMHVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNPVLGQNASGSGTQQRQLAETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPG
2) HRVVAPAAANGSSNQAIPSLVSAAPPKAAHQAEDQVHDEAEKIEA
3) KKFMTITNSQHDHHYREIQNYAVRCEQDALNRTTNKEDYLRNIAQRI
4) MEMKVRRSQSLQAGTTPSAQRPSSQQQNVCIMPQNPGQVPDQHRASAPNSQIEASQEQTVMVAAPDRYL
5) PAPSPLPYRPRNGKMKRDFDHVTSRPVSSPLSST
6) QPVKVASPHVASLSASVKSSVPKPGVARVVSPSASEKSRLASSPSRPEGAHAASPSSTSVESTLPTPIAKPGTVRAASPCTPVKSTSQSPVTKPGVAEVDSRRACVTSKLKSPVGKPETTGAASPCASVKS
7) TCDASRQQKQQEQVTNAKTSRMEQTIMTRTPTPQQESHGCHLL
157
680
38
87
761
535
459
281
724
84
155
794
665
501










Molecular Recognition Features






MoRF SequenceStartStop




1) LPYRPR
766
771